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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 1-50 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%) notes
scnpilot_p_inoc_scaffold_5200 20 7395 bp 53.75 4.91 92.74
scnpilot_p_inoc_scaffold_1437 20 24360 bp 59.84 4.32 65.38
scnpilot_p_inoc_scaffold_1317 20 22902 bp 58.80 4.39 62.71
scnpilot_p_inoc_scaffold_1267 18 25459 bp 59.63 4.71 72.69
scnpilot_p_inoc_scaffold_1700 17 30222 bp 59.56 7.40 80.71
scnpilot_p_inoc_scaffold_1967 16 22094 bp 63.44 5.36 71.68
scnpilot_p_inoc_scaffold_2346 16 14872 bp 52.72 4.40 59.16
scnpilot_p_inoc_scaffold_1466 15 20374 bp 57.97 4.61 80.87
scnpilot_p_inoc_scaffold_1996 15 15145 bp 55.83 4.69 71.57
scnpilot_p_inoc_scaffold_2349 15 13156 bp 54.86 4.23 62.55
scnpilot_p_inoc_scaffold_2360 15 13055 bp 53.76 4.04 51.15
scnpilot_p_inoc_scaffold_2952 15 13124 bp 58.50 4.56 67.59
scnpilot_p_inoc_scaffold_3162 15 10361 bp 55.53 4.13 62.08
scnpilot_p_inoc_scaffold_2043 14 14776 bp 60.75 4.32 71.22
scnpilot_p_inoc_scaffold_1484 14 20066 bp 59.37 4.49 82.36
scnpilot_p_inoc_scaffold_3054 14 14474 bp 60.09 4.63 83.03
scnpilot_p_inoc_scaffold_1605 14 18432 bp 61.72 5.00 74.77
scnpilot_p_inoc_scaffold_7220 14 5895 bp 64.39 3.10 88.85
scnpilot_p_inoc_scaffold_2543 13 12333 bp 62.83 4.26 85.55
scnpilot_p_inoc_scaffold_1679 13 17677 bp 60.98 4.02 85.94
scnpilot_p_inoc_scaffold_2544 13 14831 bp 56.81 3.98 76.66
scnpilot_p_inoc_scaffold_2057 13 14724 bp 61.63 4.27 76.59
scnpilot_p_inoc_scaffold_2838 13 16879 bp 60.29 4.72 66.78
scnpilot_p_inoc_scaffold_3307 13 10093 bp 54.76 4.27 67.29
scnpilot_p_inoc_scaffold_3878 13 17107 bp 62.86 4.08 72.32
scnpilot_p_inoc_scaffold_2162 13 20083 bp 60.86 3.90 75.74
scnpilot_p_inoc_scaffold_5368 13 16234 bp 57.21 4.26 70.96
scnpilot_p_inoc_scaffold_2194 13 16493 bp 61.10 4.51 62.70
scnpilot_p_inoc_scaffold_1842 13 16211 bp 56.48 4.39 61.42
scnpilot_p_inoc_scaffold_1610 13 18340 bp 62.01 4.65 77.40
scnpilot_p_inoc_scaffold_2487 13 17730 bp 57.54 4.84 71.00
scnpilot_p_inoc_scaffold_2513 12 12458 bp 57.32 4.58 65.77
scnpilot_p_inoc_scaffold_2780 12 11471 bp 56.76 4.29 58.22
scnpilot_p_inoc_scaffold_1916 12 15698 bp 58.12 4.01 64.61
scnpilot_p_inoc_scaffold_5214 12 7382 bp 58.43 3.66 64.90
scnpilot_p_inoc_scaffold_2547 12 12317 bp 60.18 4.94 74.48
scnpilot_p_inoc_scaffold_1441 12 20743 bp 63.66 4.71 74.93
scnpilot_p_inoc_scaffold_1963 12 15349 bp 60.13 4.18 80.27
scnpilot_p_inoc_scaffold_3842 12 9028 bp 51.84 3.75 70.12
scnpilot_p_inoc_scaffold_2430 12 12766 bp 62.20 4.66 79.36
scnpilot_p_inoc_scaffold_1575 12 18834 bp 60.99 4.67 71.17
scnpilot_p_inoc_scaffold_4842 12 7764 bp 58.60 4.98 78.48
scnpilot_p_inoc_scaffold_2963 12 10872 bp 59.63 4.68 80.96
scnpilot_p_inoc_scaffold_2196 12 13864 bp 52.35 3.98 38.91
scnpilot_p_inoc_scaffold_2731 12 11635 bp 58.56 4.69 74.72
scnpilot_p_inoc_scaffold_1614 12 18320 bp 58.18 4.44 74.08
scnpilot_p_inoc_scaffold_3190 12 10316 bp 53.51 4.13 58.98
scnpilot_p_inoc_scaffold_1407 11 21305 bp 61.00 4.53 66.45
scnpilot_p_inoc_scaffold_7271 11 5869 bp 56.96 4.65 53.11
scnpilot_p_inoc_scaffold_4419 11 8267 bp 55.46 4.55 62.67
Displaying items 1-50 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.