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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 1-50 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_11660
Species: Micromonas sp. RCC299 (100%)
1 4200 bp 50.02 3.54 21.07
scnpilot_p_inoc_scaffold_11254
Domain: Eukaryota (66.67%)
3 4311 bp 52.24 3.97 27.77
scnpilot_p_inoc_scaffold_11447 4 4258 bp 51.15 4.37 30.37
scnpilot_p_inoc_scaffold_9348 5 4914 bp 48.90 4.24 31.07
scnpilot_p_inoc_scaffold_6319 5 6456 bp 55.98 4.44 32.16
scnpilot_p_inoc_scaffold_8962 5 5073 bp 53.07 4.55 32.53
scnpilot_p_inoc_scaffold_7316 5 5844 bp 49.54 4.54 33.52
scnpilot_p_inoc_scaffold_9155 5 5942 bp 49.92 4.37 34.23
scnpilot_p_inoc_scaffold_9395
Domain: Eukaryota (75%)
4 4898 bp 52.41 3.92 34.24
scnpilot_p_inoc_scaffold_5617 8 7020 bp 50.56 3.91 34.87
scnpilot_p_inoc_scaffold_12396
Species: Pseudogymnoascus pannorum (50%)
2 4026 bp 59.66 4.66 35.25
scnpilot_p_inoc_scaffold_9762 3 4778 bp 57.56 4.14 35.79
scnpilot_p_inoc_scaffold_13406 4 7385 bp 55.07 3.78 35.87
scnpilot_p_inoc_scaffold_11953 4 4131 bp 52.48 4.18 35.95
scnpilot_p_inoc_scaffold_9577
Species: Ananas comosus (50%)
2 4843 bp 57.55 4.27 37.91
scnpilot_p_inoc_scaffold_9557
Domain: Metazoa (66.67%)
3 4849 bp 53.72 4.30 37.93
scnpilot_p_inoc_scaffold_6356 3 6430 bp 53.28 4.01 37.98
scnpilot_p_inoc_scaffold_8635 5 5196 bp 56.22 4.62 38.34
scnpilot_p_inoc_scaffold_9728 3 4787 bp 58.09 4.42 38.35
scnpilot_p_inoc_scaffold_2196 12 13864 bp 52.35 3.98 38.91
scnpilot_p_inoc_scaffold_6537 3 6309 bp 52.26 6.37 39.09
scnpilot_p_inoc_scaffold_4052 7 8720 bp 53.82 4.75 39.25
scnpilot_p_inoc_scaffold_10146 4 4652 bp 55.22 4.00 39.60
scnpilot_p_inoc_scaffold_4965 10 7633 bp 53.90 3.81 39.77
scnpilot_p_inoc_scaffold_8241 6 5369 bp 48.59 3.80 39.78
scnpilot_p_inoc_scaffold_2225 8 13696 bp 54.53 4.59 39.95
scnpilot_p_inoc_scaffold_6405
Domain: Eukaryota (66.67%)
3 6396 bp 55.21 4.53 40.06
scnpilot_p_inoc_scaffold_10669 5 4484 bp 54.62 4.58 40.08
scnpilot_p_inoc_scaffold_4014 5 8780 bp 54.66 4.27 40.08
scnpilot_p_inoc_scaffold_7589 4 5708 bp 56.80 4.70 40.47
scnpilot_p_inoc_scaffold_6498
Species: Tetrapisispora blattae (50%)
2 6338 bp 55.24 3.98 40.90
scnpilot_p_inoc_scaffold_10221 5 4631 bp 56.12 3.56 41.07
scnpilot_p_inoc_scaffold_7169
Species: Bacillus mycoides (50%)
2 5925 bp 54.58 3.04 41.16
scnpilot_p_inoc_scaffold_8061 4 5453 bp 51.42 4.51 41.37
scnpilot_p_inoc_scaffold_10140
Domain: Metazoa (50%)
4 4654 bp 52.17 3.58 41.58
scnpilot_p_inoc_scaffold_10280 3 4615 bp 60.98 3.80 41.60
scnpilot_p_inoc_scaffold_10748 4 4456 bp 49.62 4.24 41.67
scnpilot_p_inoc_scaffold_3164 7 10358 bp 51.33 4.53 42.03
scnpilot_p_inoc_scaffold_9999 2 4703 bp 63.92 4.75 42.04
scnpilot_p_inoc_scaffold_4234 8 8483 bp 54.07 4.33 42.33
scnpilot_p_inoc_scaffold_11057
Domain: Eukaryota (66.67%)
3 4369 bp 55.25 4.19 42.50
scnpilot_p_inoc_scaffold_12297 3 4048 bp 55.61 4.59 42.84
scnpilot_p_inoc_scaffold_11252 6 7565 bp 54.12 4.32 42.87
scnpilot_p_inoc_scaffold_12084 3 4105 bp 56.83 4.38 43.05
scnpilot_p_inoc_scaffold_9890
Domain: Metazoa (60%)
5 4741 bp 53.34 3.77 43.09
scnpilot_p_inoc_scaffold_12235 4 4062 bp 52.63 3.88 43.13
scnpilot_p_inoc_scaffold_6729
Species: Reticulomyxa filosa (50%)
2 6195 bp 54.25 4.38 43.24
scnpilot_p_inoc_scaffold_6078 4 6637 bp 52.19 4.38 43.35
scnpilot_p_inoc_scaffold_5001 5 7596 bp 55.69 4.46 43.44
scnpilot_p_inoc_scaffold_9302
Species: Albugo candida (50%)
2 4934 bp 53.10 3.65 43.47
Displaying items 1-50 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.