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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 1-50 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_1700 17 30222 bp 59.56 7.40 80.71
scnpilot_p_inoc_scaffold_1141
Species: Weissella confusa (100%)
1 26678 bp 68.74 5.03 99.99
scnpilot_p_inoc_scaffold_1267 18 25459 bp 59.63 4.71 72.69
scnpilot_p_inoc_scaffold_1437 20 24360 bp 59.84 4.32 65.38
scnpilot_p_inoc_scaffold_1317 20 22902 bp 58.80 4.39 62.71
scnpilot_p_inoc_scaffold_1967 16 22094 bp 63.44 5.36 71.68
scnpilot_p_inoc_scaffold_1371 8 21961 bp 59.24 4.35 90.76
scnpilot_p_inoc_scaffold_1394
Species: Nannochloropsis gaditana (50%)
6 21563 bp 67.97 4.92 91.16
scnpilot_p_inoc_scaffold_1407 11 21305 bp 61.00 4.53 66.45
scnpilot_p_inoc_scaffold_1425 5 21008 bp 65.65 4.63 95.54
scnpilot_p_inoc_scaffold_1432 9 20944 bp 64.72 4.57 79.60
scnpilot_p_inoc_scaffold_1441 12 20743 bp 63.66 4.71 74.93
scnpilot_p_inoc_scaffold_1466 15 20374 bp 57.97 4.61 80.87
scnpilot_p_inoc_scaffold_1869 7 20177 bp 61.46 4.66 84.96
scnpilot_p_inoc_scaffold_2162 13 20083 bp 60.86 3.90 75.74
scnpilot_p_inoc_scaffold_1484 14 20066 bp 59.37 4.49 82.36
scnpilot_p_inoc_scaffold_1508 6 19743 bp 64.22 4.94 93.63
scnpilot_p_inoc_scaffold_1550 6 19193 bp 59.75 4.38 91.64
scnpilot_p_inoc_scaffold_1554 4 19128 bp 53.12 3.75 93.43
scnpilot_p_inoc_scaffold_1558 9 19035 bp 61.54 4.33 74.72
scnpilot_p_inoc_scaffold_1561 11 18997 bp 64.44 5.08 79.91
scnpilot_p_inoc_scaffold_1567 9 18924 bp 62.79 4.46 74.03
scnpilot_p_inoc_scaffold_1568 5 18922 bp 59.95 4.38 91.66
scnpilot_p_inoc_scaffold_1575 12 18834 bp 60.99 4.67 71.17
scnpilot_p_inoc_scaffold_1587 11 18683 bp 62.13 4.93 78.62
scnpilot_p_inoc_scaffold_1599 8 18491 bp 62.91 4.68 84.85
scnpilot_p_inoc_scaffold_1605 14 18432 bp 61.72 5.00 74.77
scnpilot_p_inoc_scaffold_1610 13 18340 bp 62.01 4.65 77.40
scnpilot_p_inoc_scaffold_1614 12 18320 bp 58.18 4.44 74.08
scnpilot_p_inoc_scaffold_1742 11 18202 bp 57.48 4.99 72.67
scnpilot_p_inoc_scaffold_1631 9 18199 bp 61.68 4.21 71.58
scnpilot_p_inoc_scaffold_1632 11 18190 bp 59.49 4.21 66.78
scnpilot_p_inoc_scaffold_1656 9 17922 bp 55.72 4.12 67.81
scnpilot_p_inoc_scaffold_1664 9 17849 bp 60.73 4.35 67.73
scnpilot_p_inoc_scaffold_1667 8 17783 bp 60.31 4.10 83.44
scnpilot_p_inoc_scaffold_2487 13 17730 bp 57.54 4.84 71.00
scnpilot_p_inoc_scaffold_1677 8 17693 bp 66.74 4.72 89.39
scnpilot_p_inoc_scaffold_1679 13 17677 bp 60.98 4.02 85.94
scnpilot_p_inoc_scaffold_1681 6 17636 bp 65.83 4.98 92.15
scnpilot_p_inoc_scaffold_1690
Domain: Eukaryota (66.67%)
6 17566 bp 66.57 4.95 86.43
scnpilot_p_inoc_scaffold_1933 6 17536 bp 63.54 4.31 95.43
scnpilot_p_inoc_scaffold_1699 9 17504 bp 58.27 4.13 71.38
scnpilot_p_inoc_scaffold_2570 7 17478 bp 58.00 4.72 88.48
scnpilot_p_inoc_scaffold_3282 7 17322 bp 62.48 4.59 77.99
scnpilot_p_inoc_scaffold_2458 7 17289 bp 62.94 4.69 78.17
scnpilot_p_inoc_scaffold_2463 11 17157 bp 63.55 4.54 77.22
scnpilot_p_inoc_scaffold_3878 13 17107 bp 62.86 4.08 72.32
scnpilot_p_inoc_scaffold_2296 11 17091 bp 62.51 4.94 73.32
scnpilot_p_inoc_scaffold_1745 10 17068 bp 62.06 4.57 76.21
scnpilot_p_inoc_scaffold_1761 4 16921 bp 56.72 4.31 99.04
Displaying items 1-50 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.