ggKbase home page
Advanced Search
Search Help

scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 501-550 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_3229 6 10244 bp 57.73 4.16 85.37
scnpilot_p_inoc_scaffold_4150 6 8578 bp 64.29 4.91 80.09
scnpilot_p_inoc_scaffold_7262 6 5875 bp 57.19 3.96 68.37
scnpilot_p_inoc_scaffold_7518 6 5741 bp 57.76 4.76 59.99
scnpilot_p_inoc_scaffold_2015 6 15030 bp 61.35 4.62 69.30
scnpilot_p_inoc_scaffold_9024 6 5049 bp 60.41 4.22 77.66
scnpilot_p_inoc_scaffold_9536 6 4855 bp 57.90 4.54 69.64
scnpilot_p_inoc_scaffold_4668 6 7952 bp 63.58 4.51 81.79
scnpilot_p_inoc_scaffold_6333 6 6442 bp 55.50 4.52 71.25
scnpilot_p_inoc_scaffold_7528 6 8571 bp 66.96 4.97 78.12
scnpilot_p_inoc_scaffold_7274 6 5867 bp 53.59 4.27 64.48
scnpilot_p_inoc_scaffold_3243 6 10218 bp 59.10 4.62 69.91
scnpilot_p_inoc_scaffold_5467 6 10057 bp 57.65 4.85 76.28
scnpilot_p_inoc_scaffold_2285
Phylum: Chlorophyta (50%)
6 13428 bp 58.80 4.49 77.66
scnpilot_p_inoc_scaffold_1933 6 17536 bp 63.54 4.31 95.43
scnpilot_p_inoc_scaffold_6857 6 6101 bp 58.96 4.72 51.63
scnpilot_p_inoc_scaffold_7281 6 5865 bp 61.99 4.40 71.87
scnpilot_p_inoc_scaffold_1681 6 17636 bp 65.83 4.98 92.15
scnpilot_p_inoc_scaffold_11579 6 4223 bp 60.43 4.90 57.19
scnpilot_p_inoc_scaffold_2548 6 12314 bp 64.89 4.56 81.32
scnpilot_p_inoc_scaffold_6860 6 6099 bp 58.44 4.18 65.42
scnpilot_p_inoc_scaffold_2037 6 14805 bp 62.64 5.01 79.55
scnpilot_p_inoc_scaffold_3765 6 9164 bp 55.99 4.03 66.85
scnpilot_p_inoc_scaffold_6349 6 6431 bp 62.91 4.48 67.97
scnpilot_p_inoc_scaffold_5478 6 7146 bp 53.19 5.52 67.42
scnpilot_p_inoc_scaffold_3512 6 9657 bp 57.70 4.44 62.38
scnpilot_p_inoc_scaffold_5480 6 12420 bp 62.17 4.94 71.28
scnpilot_p_inoc_scaffold_10505
Order: Burkholderiales (50%)
6 4537 bp 60.63 3.37 91.91
scnpilot_p_inoc_scaffold_12625 6 7876 bp 60.27 4.76 70.81
scnpilot_p_inoc_scaffold_1690
Domain: Eukaryota (66.67%)
6 17566 bp 66.57 4.95 86.43
scnpilot_p_inoc_scaffold_3006 6 10742 bp 65.07 4.36 94.37
scnpilot_p_inoc_scaffold_4184 6 8536 bp 63.24 4.85 74.09
scnpilot_p_inoc_scaffold_8240 6 5369 bp 63.18 4.25 89.12
scnpilot_p_inoc_scaffold_5744 6 6917 bp 60.56 4.14 85.14
scnpilot_p_inoc_scaffold_8241 6 5369 bp 48.59 3.80 39.78
scnpilot_p_inoc_scaffold_8498 6 5252 bp 63.56 3.91 86.60
scnpilot_p_inoc_scaffold_6362 6 6427 bp 58.11 4.36 70.95
scnpilot_p_inoc_scaffold_4699 6 7917 bp 58.56 4.72 68.89
scnpilot_p_inoc_scaffold_4188
Domain: Metazoa (50%)
6 11076 bp 63.52 4.39 69.56
scnpilot_p_inoc_scaffold_4700 6 7915 bp 55.78 4.13 61.36
scnpilot_p_inoc_scaffold_2053 6 14742 bp 63.55 4.54 78.71
scnpilot_p_inoc_scaffold_4701 6 7913 bp 61.71 4.51 65.74
scnpilot_p_inoc_scaffold_3525
Domain: Bacteria (50%)
6 9622 bp 70.55 4.80 88.89
scnpilot_p_inoc_scaffold_2822 6 11320 bp 60.34 4.16 80.35
scnpilot_p_inoc_scaffold_2567 6 12250 bp 62.59 4.51 77.00
scnpilot_p_inoc_scaffold_9063 6 5938 bp 62.70 4.12 79.47
scnpilot_p_inoc_scaffold_6368 6 6422 bp 60.23 4.81 56.48
scnpilot_p_inoc_scaffold_3785 6 9134 bp 61.27 4.94 73.18
scnpilot_p_inoc_scaffold_4706
Domain: Fungi (50%)
6 7902 bp 63.74 4.44 75.66
scnpilot_p_inoc_scaffold_4196 6 9058 bp 56.66 4.60 64.48
Displaying items 501-550 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.