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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 551-600 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_3276 6 10831 bp 58.54 3.92 55.18
scnpilot_p_inoc_scaffold_8511 6 5247 bp 57.00 5.03 72.90
scnpilot_p_inoc_scaffold_9327
Domain: Eukaryota (50%)
6 4919 bp 59.93 4.64 68.00
scnpilot_p_inoc_scaffold_5248 6 10509 bp 59.84 4.62 75.02
scnpilot_p_inoc_scaffold_10531 6 4527 bp 57.83 3.94 73.29
scnpilot_p_inoc_scaffold_8771
Order: Burkholderiales (50%)
6 5148 bp 62.18 3.38 90.38
scnpilot_p_inoc_scaffold_3539 6 9592 bp 60.41 4.71 75.38
scnpilot_p_inoc_scaffold_9331 6 5666 bp 55.45 4.45 76.67
scnpilot_p_inoc_scaffold_6123 6 6605 bp 58.06 4.22 73.58
scnpilot_p_inoc_scaffold_4461 6 8206 bp 59.09 4.11 83.35
scnpilot_p_inoc_scaffold_2327 6 13266 bp 61.69 4.70 81.09
scnpilot_p_inoc_scaffold_5003 6 7594 bp 57.55 4.21 53.81
scnpilot_p_inoc_scaffold_11108 6 4352 bp 58.23 4.00 64.59
scnpilot_p_inoc_scaffold_3806 6 9103 bp 59.89 4.07 66.64
scnpilot_p_inoc_scaffold_8271 6 5360 bp 56.51 4.09 53.56
scnpilot_p_inoc_scaffold_6391 6 6407 bp 62.09 5.34 84.05
scnpilot_p_inoc_scaffold_7327
Genus: Burkholderia (50%)
6 5837 bp 59.29 3.39 89.99
scnpilot_p_inoc_scaffold_5008
Domain: Eukaryota (50%)
6 7588 bp 59.77 4.31 58.75
scnpilot_p_inoc_scaffold_4729 6 7877 bp 66.60 4.99 70.72
scnpilot_p_inoc_scaffold_3042 6 10653 bp 59.28 4.34 75.73
scnpilot_p_inoc_scaffold_4477 6 8189 bp 61.75 4.65 60.85
scnpilot_p_inoc_scaffold_4226 6 8489 bp 59.01 5.00 76.79
scnpilot_p_inoc_scaffold_5274 6 7328 bp 63.44 4.32 88.67
scnpilot_p_inoc_scaffold_9868 6 4748 bp 56.82 4.04 47.70
scnpilot_p_inoc_scaffold_3053 6 10633 bp 59.90 3.98 77.25
scnpilot_p_inoc_scaffold_5533 6 7101 bp 56.63 3.82 67.05
scnpilot_p_inoc_scaffold_10302 6 4608 bp 56.84 4.75 57.81
scnpilot_p_inoc_scaffold_9870 6 4747 bp 59.62 4.39 66.29
scnpilot_p_inoc_scaffold_6662
Domain: Eukaryota (50%)
6 6230 bp 57.59 5.15 70.98
scnpilot_p_inoc_scaffold_4743 6 7870 bp 60.56 4.33 72.27
scnpilot_p_inoc_scaffold_5024 6 7566 bp 68.00 4.70 95.48
scnpilot_p_inoc_scaffold_8289 6 5351 bp 59.43 4.96 65.48
scnpilot_p_inoc_scaffold_11897 6 4146 bp 62.71 3.69 83.57
scnpilot_p_inoc_scaffold_5539 6 7095 bp 50.09 4.31 47.32
scnpilot_p_inoc_scaffold_9108 6 5013 bp 59.09 5.39 74.27
scnpilot_p_inoc_scaffold_5540 6 7094 bp 51.49 3.38 76.16
scnpilot_p_inoc_scaffold_3061 6 10607 bp 64.66 4.38 94.61
scnpilot_p_inoc_scaffold_7349 6 5828 bp 59.81 3.50 70.52
scnpilot_p_inoc_scaffold_6414 6 6392 bp 51.67 3.71 86.40
scnpilot_p_inoc_scaffold_6927 6 6058 bp 57.31 3.91 73.29
scnpilot_p_inoc_scaffold_7095 6 5966 bp 63.36 4.88 70.35
scnpilot_p_inoc_scaffold_7607
Domain: Viridiplantae (50%)
6 7712 bp 61.24 5.08 59.91
scnpilot_p_inoc_scaffold_5031 6 7563 bp 55.55 4.46 58.03
scnpilot_p_inoc_scaffold_8040 6 5464 bp 57.76 4.09 68.69
scnpilot_p_inoc_scaffold_5800 6 9494 bp 68.27 5.13 82.85
scnpilot_p_inoc_scaffold_7353 6 8437 bp 65.81 4.89 76.80
scnpilot_p_inoc_scaffold_5545
Phylum: Ascomycota (50%)
6 7086 bp 64.04 5.10 83.32
scnpilot_p_inoc_scaffold_7866 6 5568 bp 55.26 3.10 77.64
scnpilot_p_inoc_scaffold_12437 6 7423 bp 68.64 4.91 80.71
scnpilot_p_inoc_scaffold_3837 6 9040 bp 59.05 4.88 66.27
Displaying items 551-600 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.