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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 101-150 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_3338 10 10003 bp 59.56 4.89 63.22
scnpilot_p_inoc_scaffold_3600 10 9477 bp 58.25 3.96 72.27
scnpilot_p_inoc_scaffold_2646 10 11947 bp 54.71 4.27 61.75
scnpilot_p_inoc_scaffold_7131 10 8496 bp 58.56 4.52 62.25
scnpilot_p_inoc_scaffold_2913
Domain: Metazoa (50%)
10 11027 bp 60.50 4.58 68.04
scnpilot_p_inoc_scaffold_3120 10 10463 bp 55.38 4.82 55.48
scnpilot_p_inoc_scaffold_8361 10 8643 bp 61.46 4.01 57.55
scnpilot_p_inoc_scaffold_3642 10 9391 bp 54.82 4.22 61.08
scnpilot_p_inoc_scaffold_7677
Domain: Bacteria (60%)
10 5661 bp 59.80 8.00 94.01
scnpilot_p_inoc_scaffold_2175 10 13943 bp 59.33 4.43 70.08
scnpilot_p_inoc_scaffold_4320 10 8385 bp 56.60 4.88 64.87
scnpilot_p_inoc_scaffold_2699 10 11746 bp 58.84 4.51 75.60
scnpilot_p_inoc_scaffold_8388 10 10503 bp 69.16 4.94 79.21
scnpilot_p_inoc_scaffold_5132 10 10978 bp 57.28 4.65 57.61
scnpilot_p_inoc_scaffold_3165 10 10356 bp 58.27 4.58 68.28
scnpilot_p_inoc_scaffold_1855 10 16134 bp 55.21 4.05 89.07
scnpilot_p_inoc_scaffold_3945 10 8878 bp 56.99 4.31 82.99
scnpilot_p_inoc_scaffold_2477 10 12608 bp 56.83 4.87 62.39
scnpilot_p_inoc_scaffold_1875 10 16009 bp 60.15 4.90 63.70
scnpilot_p_inoc_scaffold_4642 10 7977 bp 59.31 4.29 66.57
scnpilot_p_inoc_scaffold_3468 10 9725 bp 56.13 4.72 51.98
scnpilot_p_inoc_scaffold_2253 10 13605 bp 57.05 4.63 59.40
scnpilot_p_inoc_scaffold_5440 10 11107 bp 62.90 4.73 72.01
scnpilot_p_inoc_scaffold_2514 9 12452 bp 67.07 4.90 85.19
scnpilot_p_inoc_scaffold_1656 9 17922 bp 55.72 4.12 67.81
scnpilot_p_inoc_scaffold_12081 9 7869 bp 61.61 4.33 70.68
scnpilot_p_inoc_scaffold_2267
Order: Anaerolineales (55.56%)
9 13521 bp 54.35 4.08 74.28
scnpilot_p_inoc_scaffold_5454 9 7175 bp 55.18 4.47 58.37
scnpilot_p_inoc_scaffold_1664 9 17849 bp 60.73 4.35 67.73
scnpilot_p_inoc_scaffold_3747
Domain: Eukaryota (77.78%)
9 9197 bp 59.63 4.57 83.67
scnpilot_p_inoc_scaffold_3236 9 10228 bp 54.82 4.44 73.27
scnpilot_p_inoc_scaffold_5206 9 7389 bp 57.80 3.57 65.21
scnpilot_p_inoc_scaffold_2792 9 14934 bp 62.60 4.68 75.21
scnpilot_p_inoc_scaffold_2794 9 11432 bp 56.11 4.17 58.00
scnpilot_p_inoc_scaffold_1935 9 15526 bp 66.15 4.71 85.85
scnpilot_p_inoc_scaffold_1936 9 15519 bp 56.41 4.26 75.82
scnpilot_p_inoc_scaffold_1432 9 20944 bp 64.72 4.57 79.60
scnpilot_p_inoc_scaffold_5482 9 13454 bp 63.16 4.38 71.09
scnpilot_p_inoc_scaffold_2556 9 12292 bp 64.67 4.54 82.35
scnpilot_p_inoc_scaffold_3518 9 9643 bp 59.46 3.84 68.85
scnpilot_p_inoc_scaffold_4442 9 8228 bp 64.97 4.45 70.44
scnpilot_p_inoc_scaffold_1699 9 17504 bp 58.27 4.13 71.38
scnpilot_p_inoc_scaffold_3268 9 10168 bp 54.54 4.44 69.69
scnpilot_p_inoc_scaffold_2314 9 15375 bp 56.51 4.29 81.11
scnpilot_p_inoc_scaffold_3028 9 10677 bp 56.34 4.57 68.50
scnpilot_p_inoc_scaffold_3540 9 9592 bp 66.57 4.86 85.70
scnpilot_p_inoc_scaffold_3541 9 9591 bp 59.64 4.80 60.34
scnpilot_p_inoc_scaffold_3286 9 10135 bp 63.20 5.31 76.87
scnpilot_p_inoc_scaffold_3798 9 9110 bp 62.60 4.64 86.11
scnpilot_p_inoc_scaffold_5513 9 7114 bp 54.23 4.36 72.11
Displaying items 101-150 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.