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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 301-350 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_3680 8 9318 bp 59.12 4.41 72.92
scnpilot_p_inoc_scaffold_3936 8 8892 bp 53.35 4.82 58.64
scnpilot_p_inoc_scaffold_2220 8 13716 bp 60.31 4.12 62.38
scnpilot_p_inoc_scaffold_4100 8 8653 bp 54.58 4.07 55.23
scnpilot_p_inoc_scaffold_4101 8 8653 bp 58.06 4.92 64.76
scnpilot_p_inoc_scaffold_3182 8 12453 bp 69.20 4.73 66.95
scnpilot_p_inoc_scaffold_2225 8 13696 bp 54.53 4.59 39.95
scnpilot_p_inoc_scaffold_9490 8 6162 bp 62.27 3.80 72.93
scnpilot_p_inoc_scaffold_2998
Domain: Eukaryota (50%)
8 10762 bp 53.42 4.38 58.07
scnpilot_p_inoc_scaffold_1879 8 15992 bp 59.67 4.29 79.58
scnpilot_p_inoc_scaffold_3194 8 11060 bp 64.94 4.90 83.84
scnpilot_p_inoc_scaffold_1371 8 21961 bp 59.24 4.35 90.76
scnpilot_p_inoc_scaffold_6807 8 6131 bp 61.77 5.33 76.48
scnpilot_p_inoc_scaffold_2242 8 13648 bp 62.99 4.18 68.08
scnpilot_p_inoc_scaffold_2247 8 13635 bp 56.55 4.19 56.66
scnpilot_p_inoc_scaffold_3470 8 9722 bp 57.77 4.41 47.86
scnpilot_p_inoc_scaffold_4907 7 7694 bp 57.30 4.62 56.23
scnpilot_p_inoc_scaffold_4911 7 7691 bp 61.25 4.37 72.01
scnpilot_p_inoc_scaffold_3741 7 9205 bp 59.04 4.43 52.05
scnpilot_p_inoc_scaffold_5709 7 6944 bp 61.41 4.36 77.77
scnpilot_p_inoc_scaffold_9790 7 4773 bp 52.52 4.65 67.38
scnpilot_p_inoc_scaffold_2271 7 16807 bp 66.08 5.22 78.79
scnpilot_p_inoc_scaffold_3490 7 9682 bp 60.16 4.31 87.56
scnpilot_p_inoc_scaffold_4667 7 7955 bp 59.40 4.00 63.85
scnpilot_p_inoc_scaffold_6588 7 6270 bp 61.98 4.74 77.89
scnpilot_p_inoc_scaffold_1924 7 15602 bp 62.09 4.23 88.32
scnpilot_p_inoc_scaffold_7781 7 5613 bp 54.21 4.33 52.33
scnpilot_p_inoc_scaffold_6846 7 6109 bp 65.49 4.74 91.54
scnpilot_p_inoc_scaffold_4671 7 7951 bp 63.61 5.34 82.90
scnpilot_p_inoc_scaffold_9031 7 5048 bp 62.72 3.57 88.73
scnpilot_p_inoc_scaffold_4929 7 7673 bp 62.95 5.42 68.66
scnpilot_p_inoc_scaffold_4418 7 8271 bp 55.63 3.61 63.84
scnpilot_p_inoc_scaffold_2539
Domain: Bacteria (57.14%)
7 12352 bp 62.19 3.93 79.01
scnpilot_p_inoc_scaffold_3499 7 9668 bp 58.75 4.20 68.30
scnpilot_p_inoc_scaffold_12868 7 6141 bp 58.87 4.15 72.84
scnpilot_p_inoc_scaffold_2541 7 12346 bp 72.26 5.18 92.46
scnpilot_p_inoc_scaffold_3247 7 10211 bp 58.28 4.30 54.15
scnpilot_p_inoc_scaffold_3760 7 9170 bp 59.17 4.76 66.38
scnpilot_p_inoc_scaffold_9299 7 4935 bp 63.10 4.80 73.80
scnpilot_p_inoc_scaffold_4940 7 7661 bp 56.72 4.41 54.71
scnpilot_p_inoc_scaffold_4429 7 8249 bp 57.26 4.82 77.17
scnpilot_p_inoc_scaffold_5733 7 6927 bp 61.27 5.00 64.75
scnpilot_p_inoc_scaffold_2297 7 13359 bp 62.44 4.53 86.91
scnpilot_p_inoc_scaffold_4689 7 9614 bp 64.56 4.15 83.75
scnpilot_p_inoc_scaffold_11073 7 7376 bp 55.10 4.74 59.71
scnpilot_p_inoc_scaffold_5995 7 6698 bp 63.08 4.77 79.23
scnpilot_p_inoc_scaffold_5228 7 7366 bp 59.03 4.60 83.98
scnpilot_p_inoc_scaffold_16912 7 4161 bp 62.39 4.36 74.84
scnpilot_p_inoc_scaffold_11593 7 4218 bp 58.80 3.17 98.86
scnpilot_p_inoc_scaffold_10514 7 4535 bp 53.78 4.07 55.70
Displaying items 301-350 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.