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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 351-400 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_3266 7 15159 bp 63.52 4.54 84.48
scnpilot_p_inoc_scaffold_5492 7 9964 bp 66.18 4.94 85.78
scnpilot_p_inoc_scaffold_8246 7 5367 bp 53.36 4.14 52.04
scnpilot_p_inoc_scaffold_16151 7 5207 bp 59.78 4.23 74.55
scnpilot_p_inoc_scaffold_9319 7 4923 bp 55.98 4.02 62.77
scnpilot_p_inoc_scaffold_8505 7 5249 bp 54.60 4.03 56.47
scnpilot_p_inoc_scaffold_7561 7 5718 bp 58.53 4.01 78.91
scnpilot_p_inoc_scaffold_2570 7 17478 bp 58.00 4.72 88.48
scnpilot_p_inoc_scaffold_1962 7 15360 bp 65.74 4.92 83.95
scnpilot_p_inoc_scaffold_5755 7 6908 bp 58.64 3.93 77.26
scnpilot_p_inoc_scaffold_3278
Domain: Eukaryota (57.14%)
7 10144 bp 59.27 4.92 81.86
scnpilot_p_inoc_scaffold_5502 7 7128 bp 52.55 3.68 85.44
scnpilot_p_inoc_scaffold_10016 7 4696 bp 56.75 4.47 61.90
scnpilot_p_inoc_scaffold_4969 7 7627 bp 57.93 4.68 72.85
scnpilot_p_inoc_scaffold_3793 7 9124 bp 58.61 4.85 72.27
scnpilot_p_inoc_scaffold_3026 7 10679 bp 59.67 4.47 80.09
scnpilot_p_inoc_scaffold_3282 7 17322 bp 62.48 4.59 77.99
scnpilot_p_inoc_scaffold_6122 7 6606 bp 54.24 3.66 66.49
scnpilot_p_inoc_scaffold_4208 7 8510 bp 57.80 3.84 66.56
scnpilot_p_inoc_scaffold_4466 7 8204 bp 53.24 3.89 84.87
scnpilot_p_inoc_scaffold_9082 7 5023 bp 60.22 4.87 63.67
scnpilot_p_inoc_scaffold_2075 7 14620 bp 61.96 4.82 80.01
scnpilot_p_inoc_scaffold_6647 7 12371 bp 62.16 4.58 78.11
scnpilot_p_inoc_scaffold_2848 7 11216 bp 58.14 4.76 72.08
scnpilot_p_inoc_scaffold_4985 7 7616 bp 58.67 3.55 81.03
scnpilot_p_inoc_scaffold_3809 7 9098 bp 61.66 4.50 65.68
scnpilot_p_inoc_scaffold_3298 7 10113 bp 49.54 3.84 59.45
scnpilot_p_inoc_scaffold_4734 7 7873 bp 65.83 5.60 77.05
scnpilot_p_inoc_scaffold_2856 7 11190 bp 56.58 3.99 51.42
scnpilot_p_inoc_scaffold_8281 7 6735 bp 61.23 4.34 72.16
scnpilot_p_inoc_scaffold_6913 7 6068 bp 59.08 3.63 57.75
scnpilot_p_inoc_scaffold_7337 7 5833 bp 59.27 3.81 97.21
scnpilot_p_inoc_scaffold_8026 7 5473 bp 57.72 4.55 77.89
scnpilot_p_inoc_scaffold_8282 7 5353 bp 53.17 3.92 70.00
scnpilot_p_inoc_scaffold_7851 7 5578 bp 62.53 4.22 64.97
scnpilot_p_inoc_scaffold_3308 7 10092 bp 62.31 4.58 65.19
scnpilot_p_inoc_scaffold_5532 7 7101 bp 53.56 4.56 55.89
scnpilot_p_inoc_scaffold_5790 7 6880 bp 48.11 5.49 58.26
scnpilot_p_inoc_scaffold_7600 7 5702 bp 54.47 4.34 66.56
scnpilot_p_inoc_scaffold_2609 7 12089 bp 64.77 4.27 88.69
scnpilot_p_inoc_scaffold_2354 7 13108 bp 60.54 4.54 71.38
scnpilot_p_inoc_scaffold_4235 7 8482 bp 61.13 4.46 73.64
scnpilot_p_inoc_scaffold_4491 7 9163 bp 57.37 5.03 70.82
scnpilot_p_inoc_scaffold_10565 7 4516 bp 53.99 3.95 55.54
scnpilot_p_inoc_scaffold_2871 7 11145 bp 59.03 4.32 73.89
scnpilot_p_inoc_scaffold_2873 7 11137 bp 61.10 3.84 76.88
scnpilot_p_inoc_scaffold_3065 7 10603 bp 59.01 5.02 96.45
scnpilot_p_inoc_scaffold_2618 7 12058 bp 62.47 4.58 63.74
scnpilot_p_inoc_scaffold_3834 7 9044 bp 62.53 4.63 67.11
scnpilot_p_inoc_scaffold_8043 7 6435 bp 57.68 4.15 78.46
Displaying items 351-400 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.