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scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5
In projects: SCNpilot_P_inoc

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %
Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 401-450 of 2836 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
scnpilot_p_inoc_scaffold_6932 7 11255 bp 65.13 4.76 79.59
scnpilot_p_inoc_scaffold_10061 7 4680 bp 57.86 3.40 66.28
scnpilot_p_inoc_scaffold_5293 7 7310 bp 61.46 4.68 70.83
scnpilot_p_inoc_scaffold_3585 7 9516 bp 64.02 5.17 78.59
scnpilot_p_inoc_scaffold_6428 7 6383 bp 62.59 4.21 87.70
scnpilot_p_inoc_scaffold_4765 7 7854 bp 59.83 4.85 77.27
scnpilot_p_inoc_scaffold_6685 7 6217 bp 51.76 3.81 75.90
scnpilot_p_inoc_scaffold_4768 7 7849 bp 53.83 4.43 72.35
scnpilot_p_inoc_scaffold_5561 7 7076 bp 53.65 3.67 78.52
scnpilot_p_inoc_scaffold_7628 7 5688 bp 58.58 5.33 70.41
scnpilot_p_inoc_scaffold_4517 7 8149 bp 59.52 4.97 72.93
scnpilot_p_inoc_scaffold_1773 7 16818 bp 57.67 4.44 62.15
scnpilot_p_inoc_scaffold_2127 7 14281 bp 57.98 4.73 65.71
scnpilot_p_inoc_scaffold_10338 7 4596 bp 57.29 4.08 64.43
scnpilot_p_inoc_scaffold_4267 7 8443 bp 61.12 4.90 81.94
scnpilot_p_inoc_scaffold_5315 7 7289 bp 60.19 4.47 64.29
scnpilot_p_inoc_scaffold_5316 7 7287 bp 57.65 4.41 67.52
scnpilot_p_inoc_scaffold_13549 7 4397 bp 62.20 4.16 64.95
scnpilot_p_inoc_scaffold_7638 7 5684 bp 59.01 4.09 74.42
scnpilot_p_inoc_scaffold_4273 7 8433 bp 52.41 3.98 46.42
scnpilot_p_inoc_scaffold_9657 7 5666 bp 70.63 4.87 61.21
scnpilot_p_inoc_scaffold_12466 7 4011 bp 57.69 4.71 72.25
scnpilot_p_inoc_scaffold_6706 7 8613 bp 62.29 4.41 62.28
scnpilot_p_inoc_scaffold_6709 7 6203 bp 60.00 5.01 60.45
scnpilot_p_inoc_scaffold_2150 7 14113 bp 58.22 4.29 77.76
scnpilot_p_inoc_scaffold_3367 7 9949 bp 60.05 4.46 78.37
scnpilot_p_inoc_scaffold_9422 7 4888 bp 58.84 4.02 70.64
scnpilot_p_inoc_scaffold_6727 7 6832 bp 58.17 4.50 70.92
scnpilot_p_inoc_scaffold_7407 7 8832 bp 61.65 4.26 91.03
scnpilot_p_inoc_scaffold_3888 7 8954 bp 60.90 4.67 77.70
scnpilot_p_inoc_scaffold_3889 7 8953 bp 63.82 4.91 81.49
scnpilot_p_inoc_scaffold_3891 7 8951 bp 55.42 3.82 66.96
scnpilot_p_inoc_scaffold_3380 7 9927 bp 59.22 4.84 77.85
scnpilot_p_inoc_scaffold_3895 7 8946 bp 61.77 4.48 87.66
scnpilot_p_inoc_scaffold_4816 7 7804 bp 62.38 4.61 67.23
scnpilot_p_inoc_scaffold_5096 7 7495 bp 55.82 4.56 61.64
scnpilot_p_inoc_scaffold_4050 7 8730 bp 56.74 4.42 63.20
scnpilot_p_inoc_scaffold_4052 7 8720 bp 53.82 4.75 39.25
scnpilot_p_inoc_scaffold_3644 7 13515 bp 66.36 4.82 80.78
scnpilot_p_inoc_scaffold_2685 7 11803 bp 58.98 4.30 86.85
scnpilot_p_inoc_scaffold_3392 7 9897 bp 67.12 4.08 78.51
scnpilot_p_inoc_scaffold_3648 7 9379 bp 57.93 4.35 71.14
scnpilot_p_inoc_scaffold_3138 7 10423 bp 65.60 5.31 79.35
scnpilot_p_inoc_scaffold_3907 7 8929 bp 63.38 4.50 77.44
scnpilot_p_inoc_scaffold_7945 7 5522 bp 60.49 4.02 74.70
scnpilot_p_inoc_scaffold_5881 7 6796 bp 62.08 5.03 86.21
scnpilot_p_inoc_scaffold_6242 7 6515 bp 56.06 4.17 74.69
scnpilot_p_inoc_scaffold_5114 7 7481 bp 59.48 4.15 54.66
scnpilot_p_inoc_scaffold_3918 7 14282 bp 67.10 4.64 80.49
scnpilot_p_inoc_scaffold_7440 7 5777 bp 55.91 3.61 59.56
Displaying items 401-450 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.