ggKbase | organisms

Consensus taxonomy:

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SCN_pilot_inoc_UNK

Properties

Avg. coverage: 4.52 Longest contig: 30.22 Kbp Bin length: 20.45 Mbp GC content: 62.06 %

Contigs count: 2836 Features count: 12230 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 39 / 55 MC: 26 BSCG 17 / 51 MC: 6 ASCG 21 / 38 MC: 8

Description

not clear on coverage ESOM, based on abawaca

Displaying items 2501-2550 of 2836 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
scnpilot_p_inoc_scaffold_4484 Species: Eimeria necatrix (50%)	2	8177 bp	76.23	5.17	98.65
scnpilot_p_inoc_scaffold_11175 Species: Haemophilus pittmaniae (50%)	2	4333 bp	69.35	4.33	98.73
scnpilot_p_inoc_scaffold_12128 Species: Caenorhabditis japonica (50%)	2	4092 bp	73.29	4.03	98.75
scnpilot_p_inoc_scaffold_10586 Species: Lactobacillus kisonensis (50%)	2	4508 bp	74.20	4.39	98.82
scnpilot_p_inoc_scaffold_4452 Species: Eimeria praecox (50%)	2	8215 bp	74.85	5.13	98.86
scnpilot_p_inoc_scaffold_11593	7	4218 bp	58.80	3.17	98.86
scnpilot_p_inoc_scaffold_12052 Species: Corallococcus coralloides (50%)	2	4111 bp	72.12	4.52	98.88
scnpilot_p_inoc_scaffold_9783 Species: Dissostichus mawsoni (50%)	2	4774 bp	64.66	4.52	98.91
scnpilot_p_inoc_scaffold_4410 Species: Haemophilus pittmaniae (50%)	2	8277 bp	68.47	4.60	98.91
scnpilot_p_inoc_scaffold_6950	3	6045 bp	51.79	3.97	98.96
scnpilot_p_inoc_scaffold_5330 Species: Capsaspora owczarzaki (50%)	2	8414 bp	58.85	4.10	98.98
scnpilot_p_inoc_scaffold_6837	3	6112 bp	66.97	4.17	99.00
scnpilot_p_inoc_scaffold_7480	3	5760 bp	61.41	5.21	99.01
scnpilot_p_inoc_scaffold_1761	4	16921 bp	56.72	4.31	99.04
scnpilot_p_inoc_scaffold_9746	3	4782 bp	56.44	4.17	99.06
scnpilot_p_inoc_scaffold_8122 Species: Boreogadus saida (50%)	4	6917 bp	74.05	4.62	99.06
scnpilot_p_inoc_scaffold_11063 Species: Streptococcus mitis (50%)	2	4367 bp	52.16	3.30	99.06
scnpilot_p_inoc_scaffold_5548 Species: Eimeria mitis (50%)	2	7084 bp	67.86	5.21	99.10
scnpilot_p_inoc_scaffold_3235 Species: Oikopleura dioica (50%)	2	10230 bp	70.22	5.21	99.12
scnpilot_p_inoc_scaffold_9797 Species: Amphimedon queenslandica (100%)	1	4771 bp	52.02	3.46	99.16
scnpilot_p_inoc_scaffold_11463	3	4253 bp	57.77	4.62	99.18
scnpilot_p_inoc_scaffold_8873	2	5112 bp	56.20	4.69	99.18
scnpilot_p_inoc_scaffold_7676 Species: Streptococcus sanguinis (50%)	2	5661 bp	64.09	4.40	99.21
scnpilot_p_inoc_scaffold_8837 Species: Cucumis sativus (50%)	2	5122 bp	62.79	4.36	99.22
scnpilot_p_inoc_scaffold_6075 Phylum: Firmicutes (66.67%)	3	7379 bp	71.68	5.12	99.24
scnpilot_p_inoc_scaffold_3241 Domain: Eukaryota (66.67%)	3	10219 bp	73.43	5.08	99.26
scnpilot_p_inoc_scaffold_2872 Species: Salpingoeca rosetta (50%)	2	11139 bp	65.65	5.10	99.30
scnpilot_p_inoc_scaffold_6779 Species: Ogataea parapolymorpha (50%)	2	6157 bp	61.23	4.97	99.30
scnpilot_p_inoc_scaffold_10301 Species: Weissella confusa (100%)	1	4608 bp	65.32	4.98	99.35
scnpilot_p_inoc_scaffold_5414 Species: Lactobacillus rhamnosus (50%)	2	7198 bp	71.74	4.98	99.40
scnpilot_p_inoc_scaffold_6725 Species: Trypanosoma cruzi (50%)	2	6196 bp	57.00	4.16	99.40
scnpilot_p_inoc_scaffold_2667 Species: Chlorella variabilis (50%)	2	11871 bp	70.81	4.92	99.42
scnpilot_p_inoc_scaffold_3020	3	10697 bp	50.81	3.77	99.42
scnpilot_p_inoc_scaffold_10205 Species: Podiceps cristatus (50%)	2	4636 bp	49.94	4.21	99.46
scnpilot_p_inoc_scaffold_4447 Species: Mus musculus (100%)	1	8222 bp	68.20	4.78	99.46
scnpilot_p_inoc_scaffold_11929	4	4137 bp	62.77	4.50	99.49
scnpilot_p_inoc_scaffold_4048 Species: Salpingoeca rosetta (50%)	2	8732 bp	57.52	3.97	99.50
scnpilot_p_inoc_scaffold_10377 Species: Haemophilus pittmaniae (100%)	1	4583 bp	69.34	4.84	99.50
scnpilot_p_inoc_scaffold_7139 Species: Sporothrix schenckii (50%)	2	5942 bp	66.02	4.37	99.51
scnpilot_p_inoc_scaffold_5936 Species: Lactobacillus kisonensis (50%)	2	7816 bp	69.82	4.61	99.53
scnpilot_p_inoc_scaffold_8617	2	5204 bp	58.92	4.01	99.56
scnpilot_p_inoc_scaffold_2837 Species: Boreogadus saida (50%)	2	11263 bp	60.68	4.62	99.56
scnpilot_p_inoc_scaffold_10656 Species: Lactobacillus kisonensis (50%)	2	11010 bp	76.14	5.38	99.59
scnpilot_p_inoc_scaffold_1811 Species: Eimeria praecox (50%)	2	16485 bp	64.91	4.72	99.60
scnpilot_p_inoc_scaffold_3513 Species: Actinobacillus equuli (100%)	1	9656 bp	67.02	4.55	99.61
scnpilot_p_inoc_scaffold_8322	3	7797 bp	70.44	4.31	99.62
scnpilot_p_inoc_scaffold_2642	3	11962 bp	59.96	3.94	99.62
scnpilot_p_inoc_scaffold_13213 Species: Trametes cinnabarina (50%)	2	5315 bp	70.80	5.22	99.62
scnpilot_p_inoc_scaffold_15996 Species: Eimeria praecox (50%)	2	4011 bp	72.65	4.86	99.63
scnpilot_p_inoc_scaffold_6795 Species: Streptococcus sanguinis (100%)	1	6136 bp	60.20	4.18	99.64

Displaying items 2501-2550 of 2836 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

Warning! This will delete the current organism (scnpilot_dereplicated_Eukaryote_unknown_16) and add all its contigs / scaffolds to the organism you choose below

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Other organism

scnpilot_dereplicated_Eukaryote_unknown_16

SCNpilot_P_inoc_unknown_62_5

Description

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

Merge with other organism

Processing

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