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scnpilot_p_inoc_scaffold_1593_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1593_curated_1
RIFOXYD2_FULL_Sphingobacteria_35_12_curated, Sphingobacteria, Bacteroidetes, Bacteria

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165..947
DNA (783bp) protein (261aa)
Enoyl-CoA hydratase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJW1_NIAKG
Enoyl-CoA hydratase
Tax=RIFOXYD2_FULL_Sphingobacteria_35_12_curated
scnpilot_p_inoc_scaffold_1593_curated_2
Caldicellulosiruptor saccharolyticus, Caldicellulosiruptor, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

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977..1327
DNA (351bp) protein (117aa)
aspartate 1-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; EC=4.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00446};; Aspartate alpha-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; Contains:; Aspartate 1-decarboxylase beta chain {ECO:0000255|HAMAP-Rule:MF_00446}; Contains:; Aspartate 1-decarboxylase alpha chain {ECO:0000255|HAMAP-Rule:MF_00446}; Flags: Precursor;; TaxID=351627 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacterales Family III. Incertae Sedis; Caldicellulosiruptor.
Aspartate 1-decarboxylase n=1 Tax=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) RepID=PAND_CALS8
scnpilot_p_inoc_scaffold_1593_curated_3
RLO_Flavobacteria_35_11, Flavobacteriia, Bacteroidetes, Bacteria

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1328..2338
DNA (1011bp) protein (337aa)
Putative uncharacterized protein id=2174818 bin=GWE2_Bacteroidetes_42_24 species=Chitinophaga pinensis genus=Chitinophaga taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
hypothetical protein; K07027
Tax=RIFCSPLOWO2_12_FULL_Flavobacteria_35_11_curated
scnpilot_p_inoc_scaffold_1593_curated_4
Sporocytophaga myxococcoides, Sporocytophaga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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2322..2801
DNA (480bp) protein (160aa)
hypothetical protein n=1 Tax=Nafulsella turpanensis RepID=UPI00037D5B05
Nucleotidyltransferase {ECO:0000313|EMBL:GAL84800.1}; TaxID=153721 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Sporocytophaga.;" source="Sporocytophaga myxococcoides.;"
rfaE bifunctional protein
scnpilot_p_inoc_scaffold_1593_curated_5
Myxococcus sp. (contaminant ex DSM 436), Myxococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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2805..3650
DNA (846bp) protein (282aa)
Oxidoreductase, short chain dehydrogenase/reductase family n=1 Tax=Myxococcus sp. (contaminant ex DSM 436) RepID=U2S6A5_9DELT
short chain dehydrogenase/reductase family oxidoreductase
Oxidoreductase, short chain dehydrogenase/reductase family {ECO:0000313|EMBL:ERK91256.1}; TaxID=1297742 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Myxococcus.;" source="Myxococcus sp. (contaminant ex DSM 436).;"
scnpilot_p_inoc_scaffold_1593_curated_6
RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated, Bacteroidetes, Bacteria

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comp(3647..4834)
DNA (1188bp) protein (396aa)
Putative uncharacterized protein id=4905521 bin=GWA2_Bacteroidetes_32_17 species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=GWA2_Bacteroidetes_32_17 organism_group=Bacteroidetes
bclA; collagen-like protein
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_35_15_curated
scnpilot_p_inoc_scaffold_1593_curated_7
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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4984..8394
DNA (3411bp) protein (1137aa)
Isoleucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059}; EC=6.1.1.5 {ECO:0000256|HAMAP-Rule:MF_02003, ECO:0000256|SAAS:SAAS00106059};; Isoleucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02003}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Isoleucine--tRNA ligase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KWZ1_SOLCM
isoleucyl-tRNA synthetase
scnpilot_p_inoc_scaffold_1593_curated_8
CG_Bacteroid_01, Bacteroidetes, Bacteria

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8541..11621
DNA (3081bp) protein (1027aa)
Putative uncharacterized protein id=4204260 bin=GWF2_Bacteroidetes_38_335 species=Odoribacter splanchnicus genus=Odoribacter taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWF2_Bacteroidetes_38_335 organism_group=Bacteroidetes organism_desc=a11
gliding motility protein SprE
Tax=CG_Bacteroid_01
scnpilot_p_inoc_scaffold_1593_curated_9
R_Ignavibacteria_55_14, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

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11638..12132
DNA (495bp) protein (165aa)
asparaginase/glutaminase; K01424 L-asparaginase [EC:3.5.1.1]
Asparaginase/glutaminase id=2819626 bin=GWA2_Ignavibacteria_55_11 species=Niastella koreensis genus=Niastella taxon_order=Sphingobacteriales taxon_class=Sphingobacteriia phylum=Bacteroidetes tax=GWA2_Ignavibacteria_55_11 organism_group=Ignavibacteria organism_desc=Closely related to GWC2 genome
Tax=RIFCSPLOWO2_02_FULL_Ignavibacteria_55_14_curated
scnpilot_p_inoc_scaffold_1593_curated_10
unknown

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12151..12552
DNA (402bp) protein (134aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1593_curated_11
unknown

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comp(12556..13248)
DNA (693bp) protein (231aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1593_curated_12
BJP_08E140C01_Syntrophobacterales_43_19, Syntrophobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(13251..15371)
DNA (2121bp) protein (707aa)
short chain enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase; K01782 3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase [EC:1.1.1.35 4.2.1.17 5.1.2.3]
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI0003686402
Tax=BJP_08E140C01_Syntrophobacterales_43_19
scnpilot_p_inoc_scaffold_1593_curated_13
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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15538..16986
DNA (1449bp) protein (483aa)
Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQA0_SOLCM
glyceraldehyde-3-phosphate dehydrogenase
Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase {ECO:0000313|EMBL:AFD06395.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_p_inoc_scaffold_1593_curated_14
Flammeovirgaceae bacterium 311, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

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17039..17527
DNA (489bp) protein (163aa)
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1257021 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; unclassified Flammeovirgaceae.;" source="Flammeovirgaceae bacterium 311.;"
hypothetical protein n=1 Tax=Lewinella persica RepID=UPI00038014DB
6,7-dimethyl-8-ribityllumazine synthase
scnpilot_p_inoc_scaffold_1593_curated_15
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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17537..18376
DNA (840bp) protein (280aa)
Zn-dependent hydrolase, glyoxylase n=1 Tax=Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 / NCIMB 12057 / USAM 9D) RepID=H8KQA2_SOLCM
Zn-dependent hydrolase
Zn-dependent hydrolase, glyoxylase {ECO:0000313|EMBL:AFD06397.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
Displaying 15 items

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