ggKbase home page

scnpilot_p_inoc_scaffold_155_curated

Search features with annotation key words

Displaying items 1-30 of 169 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_155_curated_1
unknown

Not on your lists

comp(1..66)
DNA (66bp) protein (22aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_155_curated_2
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(402..1349)
DNA (948bp) protein (316aa)
Uncharacterized protein n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PI31_CHIPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU61903.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_155_curated_3
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1366..2415)
DNA (1050bp) protein (350aa)
cytochrome C peroxidase; K00428 cytochrome c peroxidase [EC:1.11.1.5]
hypothetical protein n=1 Tax=Niabella aurantiaca RepID=UPI0003664BE1
Cytochrome C peroxidase {ECO:0000313|EMBL:KEQ28263.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
scnpilot_p_inoc_scaffold_155_curated_4
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2431..3240)
DNA (810bp) protein (270aa)
hypothetical protein n=1 Tax=Cytophagales str. B6 RepID=UPI0003B47286
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ26439.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_p_inoc_scaffold_155_curated_5
Cyclobacterium marinum, Cyclobacterium, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

3466..3819
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Cyclobacterium marinum (strain ATCC 25205 / DSM 745) RepID=G0J843_CYCMS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEL27823.1}; Flags: Precursor;; TaxID=880070 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cyclobacterium.;" source="Cyclobacterium marinum (strain ATCC 25205 / DSM 745) (Flectobacillus; marinus).;"
scnpilot_p_inoc_scaffold_155_curated_6
Pedobacter antarcticus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

3863..4741
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. IITKGP-BTPF85 RepID=T0NVT8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:KEQ28255.1}; TaxID=1358423 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter antarcticus 4BY.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_155_curated_7
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4877..5785)
DNA (909bp) protein (303aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15) RepID=E4RQI8_LEAB4
fad-dependent pyridine nucleotide-disulfide oxidoreductase
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ADQ16554.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_p_inoc_scaffold_155_curated_8
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(6419..7804)
DNA (1386bp) protein (462aa)
chemotaxis protein CheY n=1 Tax=Dyadobacter beijingensis RepID=UPI00035FABDE
two component sigma-54 specific Fis family transcriptional regulator
Two component, sigma54 specific, transcriptional regulator, Fis family {ECO:0000313|EMBL:ACT93964.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_155_curated_9
Myroides odoratimimus, Myroides, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(8289..8774)
DNA (486bp) protein (162aa)
Proteinase inhibitor I11 ecotin n=2 Tax=Myroides RepID=H1Z4U0_MYROD
Uncharacterized protein {ECO:0000313|EMBL:EKB08472.1}; TaxID=883155 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Myroides.;" source="Myroides [odoratimimus] CIP 103059.;"
proteinase inhibitor I11 ecotin; K08276 ecotin
scnpilot_p_inoc_scaffold_155_curated_10
unknown

Not on your lists

8996..9484
DNA (489bp) protein (163aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_155_curated_11
Flavobacterium rivuli, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9584..10807
DNA (1224bp) protein (408aa)
hypothetical protein n=1 Tax=Flavobacterium rivuli RepID=UPI00035F7E23
Porin {ECO:0000313|EMBL:KGO86699.1}; TaxID=1121895 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium rivuli WB 3.3-2 = DSM 21788.;"
phosphate-selective porin O and P
scnpilot_p_inoc_scaffold_155_curated_12
unknown

Not on your lists

comp(11057..11461)
DNA (405bp) protein (135aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_155_curated_13
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(11798..12385)
DNA (588bp) protein (196aa)
phosphoheptose isomerase; K03271 D-sedoheptulose 7-phosphate isomerase [EC:5.3.1.28]
Phosphoheptose isomerase {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089187}; EC=5.3.1.28 {ECO:0000256|HAMAP-Rule:MF_00067, ECO:0000256|SAAS:SAAS00089180};; Sedoheptulose 7-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00067}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
Phosphoheptose isomerase n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TPQ5_NIAKG
scnpilot_p_inoc_scaffold_155_curated_14
Pedobacter kyungheensis, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(12394..14841)
DNA (2448bp) protein (816aa)
Putative LmbE-like protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2JUG7_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:KIA94086.1}; TaxID=1069985 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter kyungheensis.;"
LmbE family protein
scnpilot_p_inoc_scaffold_155_curated_15
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14925..19931)
DNA (5007bp) protein (1669aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037011DB
Uncharacterized protein {ECO:0000313|EMBL:KIC95632.1}; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
hypothetical protein
scnpilot_p_inoc_scaffold_155_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(19961..21148)
DNA (1188bp) protein (396aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8T7F8_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW01194.1}; Flags: Precursor;; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_155_curated_17
Cellulophaga algicola, Cellulophaga, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(21209..22192)
DNA (984bp) protein (328aa)
kpsf/gutq family protein (EC:5.3.1.13); K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13]
KpsF/GutQ family protein {ECO:0000313|EMBL:ADV49957.1}; EC=5.3.1.13 {ECO:0000313|EMBL:ADV49957.1};; TaxID=688270 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Cellulophaga.;" source="Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630).;"
KpsF/GutQ family protein n=1 Tax=Cellulophaga algicola (strain DSM 14237 / IC166 / ACAM 630) RepID=E6XB93_CELAD
scnpilot_p_inoc_scaffold_155_curated_18
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22270..22596)
DNA (327bp) protein (109aa)
Iron-sulfur cluster assembly accessory protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TJW9_NIAKG
iron-sulfur cluster assembly accessory protein; K13628 iron-sulfur cluster assembly protein
Iron-sulfur cluster assembly accessory protein {ECO:0000313|EMBL:AEW01867.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_155_curated_19
Flavihumibacter solisilvae, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(22609..23733)
DNA (1125bp) protein (375aa)
Cysteine desulfurase IscS {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00038344}; EC=2.8.1.7 {ECO:0000256|HAMAP-Rule:MF_00331, ECO:0000256|SAAS:SAAS00063383};; TaxID=1349421 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter solisilvae.;"
cysteine desulfurase IscS; K04487 cysteine desulfurase [EC:2.8.1.7]
Cysteine desulfurase n=1 Tax=Pontibacter sp. BAB1700 RepID=J0V6R7_9BACT
scnpilot_p_inoc_scaffold_155_curated_20
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

23933..25057
DNA (1125bp) protein (375aa)
Endonuclease I id=1739466 bin=GWE2_Bacteroidetes_42_24 species=Riemerella anatipestifer genus=Riemerella taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
endonuclease i
Tax=GWF2_Bacteroidetes_43_11_curated
scnpilot_p_inoc_scaffold_155_curated_21
Exophiala dermatitidis, Exophiala, Chaetothyriales, Chaetothyriomycetidae, Ascomycota, Fungi

Not on your lists

25125..25448
DNA (324bp) protein (108aa)
Putative uncharacterized protein n=1 Tax=Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656) RepID=H6C5A5_EXODN
Putative uncharacterized protein {ECO:0000313|EMBL:EHY58952.1}; TaxID=858893 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Chaetothyriomycetidae; Chaetothyriales; Herpotrichiellaceae; Exophiala.;" source="Exophiala dermatitidis (strain ATCC 34100 / CBS 525.76 / NIH/UT8656); (Black yeast) (Wangiella dermatitidis).;"
late embryogenesis abundant protein
scnpilot_p_inoc_scaffold_155_curated_22
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

25907..26338
DNA (432bp) protein (144aa)
Transcriptional regulator, ArsR family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PL99_CHIPD
ArsR family transcriptional regulator
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ACU58443.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_155_curated_23
unknown

Not on your lists

comp(26977..27507)
DNA (531bp) protein (177aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_155_curated_24
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(27627..29114)
DNA (1488bp) protein (496aa)
RNA polymerase, sigma 54 subunit, RpoN n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PK09_CHIPD
RNA polymerase sigma-54 subunit RpoN; K03092 RNA polymerase sigma-54 factor
RNA polymerase, sigma 54 subunit, RpoN {ECO:0000313|EMBL:ACU58350.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_155_curated_25
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

29311..32112
DNA (2802bp) protein (934aa)
leuS; leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4]
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Leucine--tRNA ligase n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PQ63_CHIPD
scnpilot_p_inoc_scaffold_155_curated_26
Chryseobacterium sp. P1-3, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(32431..34704)
DNA (2274bp) protein (758aa)
Putative uncharacterized protein n=1 Tax=Flavobacteriaceae bacterium (strain 3519-10) RepID=C6X4C9_FLAB3
Zinc metalloprotease {ECO:0000313|EMBL:KFF74450.1}; TaxID=1517683 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. P1-3.;"
hypothetical protein
scnpilot_p_inoc_scaffold_155_curated_27
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

34850..36619
DNA (1770bp) protein (590aa)
ABC transporter related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PP28_CHIPD
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACU58725.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_155_curated_28
Flavihumibacter sp. ZG627, Flavihumibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

36710..37567
DNA (858bp) protein (286aa)
Uncharacterized protein n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8THH0_NIAKG
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KIC92139.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;"
scnpilot_p_inoc_scaffold_155_curated_29
Marivirga tractuosa, Marivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

37658..38647
DNA (990bp) protein (330aa)
amidohydrolase 2 (EC:4.1.1.45); K03392 aminocarboxymuconate-semialdehyde decarboxylase [EC:4.1.1.45]
Amidohydrolase 2 {ECO:0000313|EMBL:ADR22811.1}; EC=4.1.1.45 {ECO:0000313|EMBL:ADR22811.1};; TaxID=643867 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Marivirga.;" source="Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB; 1408 / VKM B-1430 / H-43) (Microscilla tractuosa) (Flexibacter; tractuosus).;"
Amidohydrolase 2 n=1 Tax=Marivirga tractuosa (strain ATCC 23168 / DSM 4126 / NBRC 15989 / NCIMB 1408 / VKM B-1430 / H-43) RepID=E4TS94_MARTH
scnpilot_p_inoc_scaffold_155_curated_30
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

38652..39401
DNA (750bp) protein (250aa)
ABC transporter related n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PPA0_CHIPD
ABC transporter; K09687 antibiotic transport system ATP-binding protein
ABC transporter related {ECO:0000313|EMBL:ACU60536.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
Displaying items 1-30 of 169 in total

View Taxonomy