ggKbase home page

scnpilot_p_inoc_scaffold_257_curated

Search features with annotation key words

Displaying items 1-30 of 237 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_257_curated_1
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1093)
DNA (1092bp) protein (364aa)
phosphoenolpyruvate carboxykinase (EC:4.1.1.32)
Phosphoenolpyruvate carboxykinase [GTP] n=1 Tax=Acidovorax sp. KKS102 RepID=K0HLU7_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_257_curated_2
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1387..2097)
DNA (711bp) protein (237aa)
7-cyano-7-deazaguanine synthase n=1 Tax=Acidovorax radicis RepID=UPI00023786BF
exsB protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_curated_3
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2186..2332)
DNA (147bp) protein (49aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWW6_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_257_curated_4
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2409..3608)
DNA (1200bp) protein (400aa)
threonine dehydratase (EC:4.3.1.19)
threonine dehydratase n=1 Tax=Acidovorax radicis RepID=UPI00023786C1
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_curated_5
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3723..5288)
DNA (1566bp) protein (522aa)
transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI00023786C2
anaerobic nitric oxide reductase transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_257_curated_6
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5527..7809
DNA (2283bp) protein (761aa)
nitric oxide reductase large subunit n=1 Tax=Acidovorax radicis RepID=UPI00023786C3
nitric oxide reductase large subunit
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_257_curated_7
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7881..8309
DNA (429bp) protein (143aa)
Hemerythrin hhe cation-binding domain-containing protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV9_9BURK
hemerythrin HHE cation-binding domain-containing protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_curated_8
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8468..10546
DNA (2079bp) protein (693aa)
anaerobic ribonucleoside-triphosphate reductase; K00527 ribonucleoside-triphosphate reductase [EC:1.17.4.2]
Anaerobic ribonucleoside triphosphate reductase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV8_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_257_curated_9
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10645..10854
DNA (210bp) protein (70aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV7_9BURK
hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_257_curated_10
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10832..11536
DNA (705bp) protein (235aa)
anaerobic ribonucleoside-triphosphate reductase activating protein; K04069 pyruvate formate lyase activating enzyme [EC:1.97.1.4]
ribonucleoside-triphosphate reductase activating protein n=1 Tax=Acidovorax radicis RepID=UPI00023751FD
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_257_curated_11
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11725..13383
DNA (1659bp) protein (553aa)
phenylpyruvate decarboxylase (EC:4.1.1.43); K04103 indolepyruvate decarboxylase [EC:4.1.1.74]
indole-3-pyruvate decarboxylase n=1 Tax=Acidovorax radicis RepID=UPI00023751FE
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_curated_12
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13452..15326)
DNA (1875bp) protein (625aa)
ATP-dependent DNA helicase RecQ n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWV2_9BURK
ATP-dependent DNA helicase RecQ
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_257_curated_13
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15497..16951)
DNA (1455bp) protein (485aa)
GntR-family transcriptional regulator n=1 Tax=Serratia marcescens subsp. marcescens Db11 RepID=V6A0S1_SERMA
GntR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_257_curated_14
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17060..17533
DNA (474bp) protein (158aa)
Sulfurtransferase n=1 Tax=Serratia plymuthica 4Rx13 RepID=S0AK29_SERPL
sulfurtransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_257_curated_15
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17527..17994
DNA (468bp) protein (156aa)
Acetyltransferase (EC:2.3.1.-)
hypothetical protein n=1 Tax=Dyella japonica RepID=UPI000370FE34
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_257_curated_16
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18049..19392)
DNA (1344bp) protein (448aa)
Sigma-54 dependent transcription regulator n=1 Tax=Acidovorax sp. NO-1 RepID=H0BSI4_9BURK
Sigma-54 dependent transcription regulator {ECO:0000313|EMBL:EHL24646.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
sigma-54 dependent trancsriptional regulator
scnpilot_p_inoc_scaffold_257_curated_17
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19530..19709
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y705_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO90026.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
scnpilot_p_inoc_scaffold_257_curated_18
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19706..21271
DNA (1566bp) protein (522aa)
cytochrome bd ubiquinol oxidase subunit I; K00425 cytochrome d ubiquinol oxidase subunit I [EC:1.10.3.-]
Cytochrome d terminal oxidase subunit 1 {ECO:0000313|EMBL:KGM40037.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
Cytochrome d ubiquinol oxidase subunit I id=1274599 bin=GWE1_Burkholderiales_65_30 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWE1_Burkholderiales_65_30 organism_group=Betaproteobacteria
scnpilot_p_inoc_scaffold_257_curated_19
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21292..22428
DNA (1137bp) protein (379aa)
cytochrome d ubiquinol oxidase subunit II; K00426 cytochrome d ubiquinol oxidase subunit II [EC:1.10.3.-] id=5082921 bin=GWF1_Burkholderiales_GWF1_66_17 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
Cytochrome d ubiquinol oxidase subunit 2 {ECO:0000313|EMBL:KGM40038.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
transmembrane cytochrome oxidase subunit II
scnpilot_p_inoc_scaffold_257_curated_20
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22483..22605
DNA (123bp) protein (41aa)
Uncharacterized protein n=1 Tax=Pseudomonas putida ND6 RepID=I3UNR3_PSEPU
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK67134.1}; TaxID=231023 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida ND6.;"
scnpilot_p_inoc_scaffold_257_curated_21
Aquabacterium sp. NJ1, Aquabacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22607..22936
DNA (330bp) protein (110aa)
Membrane protein {ECO:0000313|EMBL:KGM42028.1}; TaxID=1538295 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Aquabacterium.;" source="Aquabacterium sp. NJ1.;"
hypothetical protein id=5082916 bin=GWF1_Burkholderiales_GWF1_66_17 species=Oxalobacteraceae bacterium IMCC9480 genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
memnrane protein
scnpilot_p_inoc_scaffold_257_curated_22
R_Burkholderiales_69_20, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22950..23615
DNA (666bp) protein (222aa)
beta-lactamase domain-containing protein; K01069 hydroxyacylglutathione hydrolase [EC:3.1.2.6]
Beta-lactamase domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VR45_POLNA
Tax=RIFCSPHIGHO2_12_FULL_Burkholderiales_69_20_curated
scnpilot_p_inoc_scaffold_257_curated_23
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23572..24288
DNA (717bp) protein (239aa)
Methyltransferase type 11 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8E0_ACISJ
type 11 methyltransferase
Methyltransferase type 11 {ECO:0000313|EMBL:ABM42515.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_257_curated_24
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24320..25456
DNA (1137bp) protein (379aa)
fad-dependent pyridine nucleotide-disulfide oxidoreductase id=12551786 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EIZ04772.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
scnpilot_p_inoc_scaffold_257_curated_25
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25688..26752
DNA (1065bp) protein (355aa)
Methionine synthase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWU7_9BURK
methionine synthase
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_curated_26
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27037..27972
DNA (936bp) protein (312aa)
tRNA 2-thiocytidine biosynthesis protein TtcA n=1 Tax=Acidovorax sp. NO-1 RepID=H0BWU6_9BURK
tRNA 2-thiocytidine biosynthesis protein TtcA
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_curated_27
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28009..29451
DNA (1443bp) protein (481aa)
protease n=1 Tax=Acidovorax radicis RepID=UPI0002375205
protease
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_257_curated_28
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29517..29828)
DNA (312bp) protein (104aa)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_257_curated_29
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29967..30968)
DNA (1002bp) protein (334aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002376007
LysR family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_257_curated_30
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31143..32783
DNA (1641bp) protein (547aa)
argininosuccinate lyase n=1 Tax=Acidovorax radicis RepID=UPI0002376006
putative argininosuccinate lyase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
Displaying items 1-30 of 237 in total

View Taxonomy