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scnpilot_p_inoc_scaffold_1449_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1449_curated_1
GWE1_Burkholderiales_65_30_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..1018
-----------------
DNA (1017bp)
protein (339aa)
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=5079358 bin=GWF1_Burkholderiales_GWF1_66_17 species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
acetyl-CoA acetyltransferase (EC:2.3.1.16); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Tax=GWE1_Burkholderiales_65_30_curated
scnpilot_p_inoc_scaffold_1449_curated_2
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1090..1854
-----------------
DNA (765bp)
protein (255aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKD9_POLNA
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ABM36117.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_p_inoc_scaffold_1449_curated_3
Polaromonas sp. JS666, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1959..2369
-----------------
DNA (411bp)
protein (137aa)
thioesterase superfamily protein; K01075 4-hydroxybenzoyl-CoA thioesterase [EC:3.1.2.23]
Thioesterase superfamily n=1 Tax=Polaromonas sp. (strain JS666 / ATCC BAA-500) RepID=Q128L3_POLSJ
Thioesterase superfamily {ECO:0000313|EMBL:ABE45029.1}; TaxID=296591 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. (strain JS666 / ATCC BAA-500).;"
scnpilot_p_inoc_scaffold_1449_curated_4
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2424..3563
-----------------
DNA (1140bp)
protein (380aa)
Amino acid/amide ABC transporter substrate-binding protein, HAAT family n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VKE1_POLNA
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:ABM36119.1}; Flags: Precursor;; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_p_inoc_scaffold_1449_curated_5
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3624..5327
-----------------
DNA (1704bp)
protein (568aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim47 RepID=UPI0002EC37F4
Acyl-CoA dehydrogenase-like protein {ECO:0000313|EMBL:EHL24057.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
acyl-CoA dehydrogenase-like protein
scnpilot_p_inoc_scaffold_1449_curated_6
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5324..5806
-----------------
DNA (483bp)
protein (161aa)
MarR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002377181
MarR family transcriptional regulator
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_1449_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5820..6806)
-----------------
DNA (987bp)
protein (329aa)
Magnesium and cobalt transport protein CorA n=2 Tax=Alicycliphilus denitrificans RepID=E8TW78_ALIDB
magnesium and cobalt transport protein cora; K03284 magnesium transporter
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1449_curated_8
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6953..7633)
-----------------
DNA (681bp)
protein (227aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7]
Phage SPO1 DNA polymerase-related protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G9D4_ALIDK
Phage SPO1 DNA polymerase-like protein {ECO:0000313|EMBL:GAO25447.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1449_curated_9
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7630..8094)
-----------------
DNA (465bp)
protein (155aa)
ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase [EC:2.3.1.128]
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TD51_ACIDE
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EER57596.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_1449_curated_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8091..8792)
-----------------
DNA (702bp)
protein (234aa)
peptidase M22, glycoprotease; K14742 hypothetical protease [EC:3.4.-.-]
Peptidase M22, glycoprotease n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCS1_ACISJ
Peptidase M22, glycoprotease {ECO:0000313|EMBL:ABM44046.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_1449_curated_11
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8827..10260
-----------------
DNA (1434bp)
protein (478aa)
d-alanyl-d-alanine carboxypeptidase/d-alanyl-d-alanine-endopeptidase (EC:3.4.16.4); K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4) [EC:3.4.16.4 3.4.21.-]
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase {ECO:0000313|EMBL:ACM34717.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ACM34717.1};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHK8_ACIET
scnpilot_p_inoc_scaffold_1449_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10313..11305
-----------------
DNA (993bp)
protein (331aa)
phospholipase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036A66B5
Lipolytic protein G-D-S-L family {ECO:0000313|EMBL:GAD23365.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
G-D-S-L family lipolytic protein
scnpilot_p_inoc_scaffold_1449_curated_13
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11399..12289)
-----------------
DNA (891bp)
protein (297aa)
Uncharacterized protein n=1 Tax=Nitrobacter hamburgensis (strain X14 / DSM 10229) RepID=Q1QMY0_NITHX
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE62417.1}; Flags: Precursor;; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
scnpilot_p_inoc_scaffold_1449_curated_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12633..14351)
-----------------
DNA (1719bp)
protein (573aa)
feruloyl esterase (EC:3.1.1.73); K09252 feruloyl esterase [EC:3.1.1.73]
hypothetical protein n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI000374ACD0
Prolyl oligopeptidase family protein {ECO:0000313|EMBL:KFJ08527.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
scnpilot_p_inoc_scaffold_1449_curated_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14683..16890)
-----------------
DNA (2208bp)
protein (736aa)
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
malate synthase G (EC:2.3.3.9); K01638 malate synthase [EC:2.3.3.9]
Malate synthase G n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W2W6_ACISJ
scnpilot_p_inoc_scaffold_1449_curated_16
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17100..18077
-----------------
DNA (978bp)
protein (326aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI00023758FE
LysR family transcriptional regulator {ECO:0000313|EMBL:EHL24871.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_1449_curated_17
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18074..18529
-----------------
DNA (456bp)
protein (152aa)
Putative transmembrane protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBD0_ACIET
hypothetical protein; K08983 putative membrane protein
Putative transmembrane protein {ECO:0000313|EMBL:ACM31814.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1449_curated_18
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(18571..18891)
-----------------
DNA (321bp)
protein (107aa)
PsiF repeat-containing protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q598_ACIAP
PsiF repeat-containing protein {ECO:0000313|EMBL:ADX44397.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
PsiF repeat-containing protein
scnpilot_p_inoc_scaffold_1449_curated_19
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


19014..20693
-----------------
DNA (1680bp)
protein (560aa)
argS; arginyl-tRNA synthetase (EC:6.1.1.19); K01887 arginyl-tRNA synthetase [EC:6.1.1.19]
Arginine--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00123}; EC=6.1.1.19 {ECO:0000255|HAMAP-Rule:MF_00123};; Arginyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00123}; Short=ArgRS {ECO:0000255|HAMAP-Rule:MF_00123};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Arginine--tRNA ligase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=SYR_ACIET rbh
scnpilot_p_inoc_scaffold_1449_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20696..21358
-----------------
DNA (663bp)
protein (221aa)
sporulation protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003817DEE
Cell division protein {ECO:0000313|EMBL:GAD21845.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
sporulation domain-containing protein
scnpilot_p_inoc_scaffold_1449_curated_21
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21418..22068
-----------------
DNA (651bp)
protein (217aa)
DSBA oxidoreductase n=1 Tax=Acidovorax avenae RepID=UPI00031DF233
DSBA oxidoreductase; K03673 thiol:disulfide interchange protein DsbA
Thiol:disulfide interchange protein {ECO:0000256|PIRNR:PIRNR001488}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_1449_curated_22
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22120..22851
-----------------
DNA (732bp)
protein (244aa)
Lipopolysaccharide transport periplasmic protein LptA n=1 Tax=Acidovorax sp. CF316 RepID=J0UDA5_9BURK
Lipopolysaccharide export system protein LptA {ECO:0000256|HAMAP-Rule:MF_01914}; Flags: Precursor;; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
OstA family protein; K09774 lipopolysaccharide export system protein LptA
scnpilot_p_inoc_scaffold_1449_curated_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22848..23615
-----------------
DNA (768bp)
protein (256aa)
sulfate-transporting ATPase (EC:3.6.3.25); K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-]
ABC transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036AFF8D
ABC transporter-like protein {ECO:0000313|EMBL:GAD21848.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1449_curated_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23620..25161
-----------------
DNA (1542bp)
protein (514aa)
RNA polymerase subunit sigma-54 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036D1622
RNA polymerase sigma-54 factor {ECO:0000256|PIRNR:PIRNR000774}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
RNA polymerase sigma-54 subunit RpoN; K03092 RNA polymerase sigma-54 factor
scnpilot_p_inoc_scaffold_1449_curated_25
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25173..26426
-----------------
DNA (1254bp)
protein (418aa)
rRNA (guanine-n(2)-)-methyltransferase (EC:2.1.1.52); K07444 putative N6-adenine-specific DNA methylase [EC:2.1.1.-]
rRNA (Guanine-N(2)-)-methyltransferase {ECO:0000313|EMBL:AEB86735.1}; EC=2.1.1.171 {ECO:0000313|EMBL:AEB86735.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
RNA methyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035F2A58
scnpilot_p_inoc_scaffold_1449_curated_26
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26410..26850
-----------------
DNA (441bp)
protein (147aa)
hypothetical protein n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI0003682AFA
hypothetical protein
Tax=CG_Rhodof_04
scnpilot_p_inoc_scaffold_1449_curated_27
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26966..28252
-----------------
DNA (1287bp)
protein (429aa)
Uracil-xanthine permease n=2 Tax=Alicycliphilus denitrificans RepID=E8TS34_ALIDB
uracil-xanthine permease
Uracil-xanthine permease {ECO:0000313|EMBL:GAO25797.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1449_curated_28
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28262..28954)
-----------------
DNA (693bp)
protein (231aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9M9Y5_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM31556.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1449_curated_29
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29186..29320
-----------------
DNA (135bp)
protein (45aa)
phenylacetic acid degradation-like protein id=5081600 bin=GWF1_Burkholderiales_GWF1_66_17 species=Albidiferax ferrireducens genus=Albidiferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
thioesterase superfamily protein
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_p_inoc_scaffold_1449_curated_30
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29307..29606
-----------------
DNA (300bp)
protein (100aa)
phenylacetic acid degradation protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000370D0D4
Esterase {ECO:0000313|EMBL:KJA11002.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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