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scnpilot_p_inoc_scaffold_1118_curated

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Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1118_curated_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..540
DNA (540bp) protein (180aa)
Phosphoglycerate mutase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4X8_ACIDE
phosphoglycerate mutase
Phosphoglycerate mutase {ECO:0000313|EMBL:EER60489.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_1118_curated_2
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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554..1069
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WY34_COMTE
Uncharacterized protein {ECO:0000313|EMBL:KJA11456.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1118_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1071..1922)
DNA (852bp) protein (284aa)
creatininase; K01470 creatinine amidohydrolase [EC:3.5.2.10]
creatininase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C0B6B
Uncharacterized protein {ECO:0000313|EMBL:GAD24408.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1118_curated_4
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2031..3035
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7T6_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59455.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1118_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3041..5371)
DNA (2331bp) protein (777aa)
TonB-dependent receptor n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6V2_ALIDK
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent receptor {ECO:0000313|EMBL:AEB86564.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1118_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5474..5845)
DNA (372bp) protein (124aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTM6_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO25179.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1118_curated_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5996..8203
DNA (2208bp) protein (736aa)
Cytochrome c biogenesis protein, transmembrane region n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WCI6_ACISJ
cytochrome c biogenesis protein transmembrane subunit
Cytochrome c biogenesis protein, transmembrane region {ECO:0000313|EMBL:ABM43961.1}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_1118_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8329..8955
DNA (627bp) protein (209aa)
alkyl hydroperoxide reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000374DE1D
Thiol-disulfide isomerase and thioredoxins {ECO:0000313|EMBL:GAD24399.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
periplasmic/membrane thiol peroxidase
scnpilot_p_inoc_scaffold_1118_curated_9
BJP_IG2103_SUB10_Xanthomonadales_61_45, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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8974..9318
DNA (345bp) protein (115aa)
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI000371CEE7
hypothetical protein; K07075
Tax=BJP_IG2103_SUB10_Xanthomonadales_61_45
scnpilot_p_inoc_scaffold_1118_curated_10
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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9287..9652
DNA (366bp) protein (122aa)
Putative uncharacterized protein n=1 Tax=Frankia sp. (strain CcI3) RepID=Q2JAY0_FRASC
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
scnpilot_p_inoc_scaffold_1118_curated_11
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9774..12242)
DNA (2469bp) protein (823aa)
TonB-dependent siderophore receptor family protein 22 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HG71_ACHXA
TonB-dependent siderophore receptor family protein 22; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor family protein 22 {ECO:0000313|EMBL:ADP18974.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
scnpilot_p_inoc_scaffold_1118_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12496..13461)
DNA (966bp) protein (322aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036D61B4
Fe2+-dicitrate sensor, membrane component {ECO:0000313|EMBL:GAD24397.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
fecR16; Fe2+-dicitrate sensor, membrane protein
scnpilot_p_inoc_scaffold_1118_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13458..13985)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D563B
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog {ECO:0000313|EMBL:GAD24396.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_1118_curated_14
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14074..14589
DNA (516bp) protein (172aa)
CoA-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000379A1AB
Predicted CoA-binding protein {ECO:0000313|EMBL:GAD24395.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
CoA-binding domain-containing protein
scnpilot_p_inoc_scaffold_1118_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14677..15999
DNA (1323bp) protein (441aa)
O-acetylhomoserine aminocarboxypropyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368280F
O-acetylhomoserine/O-acetylserine sulfhydrylase {ECO:0000313|EMBL:GAD24394.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
o-acetylhomoserine/o-acetylserine sulfhydrylase
scnpilot_p_inoc_scaffold_1118_curated_16
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16156..16344)
DNA (189bp) protein (63aa)
CsbD family protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UYP1_VARPE
Variovorax paradoxus strain MEDvA23 contig_31, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ31571.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
csbd family protein
scnpilot_p_inoc_scaffold_1118_curated_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16550..17872)
DNA (1323bp) protein (441aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037CCD9A
Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases {ECO:0000313|EMBL:GAD22955.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1118_curated_18
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17973..19085
DNA (1113bp) protein (371aa)
hemE; uroporphyrinogen decarboxylase (EC:4.1.1.37); K01599 uroporphyrinogen decarboxylase [EC:4.1.1.37]
Uroporphyrinogen decarboxylase {ECO:0000255|HAMAP-Rule:MF_00218}; Short=UPD {ECO:0000255|HAMAP-Rule:MF_00218};; Short=URO-D {ECO:0000255|HAMAP-Rule:MF_00218};; EC=4.1.1.37 {ECO:0000255|HAMAP-Rule:MF_00218};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Uroporphyrinogen decarboxylase n=1 Tax=Acidovorax sp. (strain JS42) RepID=DCUP_ACISJ rbh
scnpilot_p_inoc_scaffold_1118_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19887..22001
DNA (2115bp) protein (705aa)
Primosomal protein N' {ECO:0000256|HAMAP-Rule:MF_00983}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00983};; ATP-dependent helicase PriA {ECO:0000256|HAMAP-Rule:MF_00983}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
primosomal protein n'; K04066 primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:3.6.4.-]
primosomal protein N'''' n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365C91D
scnpilot_p_inoc_scaffold_1118_curated_20
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22173..23294
DNA (1122bp) protein (374aa)
l-asparaginase (EC:3.5.1.38); K05597 glutamin-(asparagin-)ase [EC:3.5.1.38]
L-asparaginase, type II {ECO:0000313|EMBL:ACM34569.1}; EC=3.5.1.38 {ECO:0000313|EMBL:ACM34569.1};; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
L-asparaginase, type II n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MGH4_ACIET
scnpilot_p_inoc_scaffold_1118_curated_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23493..24569)
DNA (1077bp) protein (359aa)
transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036C5A87
putative malonate transporter-like
Auxin Efflux Carrier {ECO:0000313|EMBL:GAD24390.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1118_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24604..26631
DNA (2028bp) protein (676aa)
UvrD/REP helicase; K03656 ATP-dependent DNA helicase Rep [EC:3.6.4.12]
ATP-dependent DNA helicase Rep {ECO:0000256|HAMAP-Rule:MF_01920}; EC=3.6.4.12 {ECO:0000256|HAMAP-Rule:MF_01920, ECO:0000256|SAAS:SAAS00145970};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
UvrD/REP helicase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTP4_ALIDB
scnpilot_p_inoc_scaffold_1118_curated_23
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26739..27080
DNA (342bp) protein (114aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BTU7_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24194.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
Displaying 23 items

View Taxonomy