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scnpilot_p_inoc_scaffold_1272_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1272_curated_1
Curvibacter putative symbiont of Hydra magnipapillata, Curvibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..251)
DNA (249bp) protein (83aa)
C4-dicarboxylate-binding periplasmic protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCD5_9BURK
C4-dicarboxylate-binding periplasmic protein {ECO:0000313|EMBL:CBA30456.1}; TaxID=667019 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Curvibacter.;" source="Curvibacter putative symbiont of Hydra magnipapillata.;"
TRAP dicarboxylate transporter subunit DctP; K11688 C4-dicarboxylate-binding protein DctP
scnpilot_p_inoc_scaffold_1272_curated_2
RLO_Rhodoferax_60_11, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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301..2334
DNA (2034bp) protein (678aa)
multi-sensor signal transduction histidine kinase; K11711 two-component system, LuxR family, sensor histidine kinase DctS [EC:2.7.13.3]
Multi-sensor signal transduction histidine kinase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21YD5_RHOFD
Tax=RIFCSPLOWO2_12_FULL_Rhodoferax_60_11_curated
scnpilot_p_inoc_scaffold_1272_curated_3
RLO_Burkholderiales_61_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2331..2978
DNA (648bp) protein (216aa)
Transcriptional regulatory protein fixJ n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9YCD3_9BURK
two component LuxR family transcriptional regulator; K11712 two-component system, LuxR family, response regulator DctR
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_61_40_curated
scnpilot_p_inoc_scaffold_1272_curated_4
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3391..4017
DNA (627bp) protein (209aa)
ribB; 3,4-dihydroxy-2-butanone-4-phosphate synthase (EC:4.1.99.12)
3,4-dihydroxy-2-butanone 4-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00180}; Short=DHBP synthase {ECO:0000256|HAMAP-Rule:MF_00180};; EC=4.1.99.12 {ECO:0000256|HAMAP-Rule:MF_00180};; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
3,4-dihydroxy-2-butanone 4-phosphate synthase n=1 Tax=Burkholderia thailandensis MSMB43 RepID=I6ALD8_BURTH
scnpilot_p_inoc_scaffold_1272_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4826..5455)
DNA (630bp) protein (210aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035E765F
Regulatory protein TetR {ECO:0000313|EMBL:GAD23618.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_1272_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5544..6734
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036E4662
Permeases of the major facilitator superfamily {ECO:0000313|EMBL:GAD23619.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
major facilitator superfamily protein
scnpilot_p_inoc_scaffold_1272_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6727..7461
DNA (735bp) protein (245aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D9EA9
Siderophore-interacting protein {ECO:0000313|EMBL:GAD23620.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
putative ABC transporter ATP-binding protein Rv1348/MT1390
scnpilot_p_inoc_scaffold_1272_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7475..8332)
DNA (858bp) protein (286aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036F8812
Transcriptional regulator {ECO:0000313|EMBL:GAD23621.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_1272_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8431..8823
DNA (393bp) protein (131aa)
4-oxalocrotonate tautomerase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B09E9
4-oxalocrotonate tautomerase {ECO:0000313|EMBL:GAD23622.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
4-oxalocrotonate tautomerase
scnpilot_p_inoc_scaffold_1272_curated_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8883..9896)
DNA (1014bp) protein (338aa)
Fis family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CEAE1
AraC family transcriptional regulator {ECO:0000313|EMBL:GAD23623.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_1272_curated_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9991..11604
DNA (1614bp) protein (538aa)
fumarate reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037230ED
fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein; K07077
Fumarate reductase/succinate dehydrogenase flavoprotein domain protein {ECO:0000313|EMBL:ABM43599.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_1272_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11601..12752
DNA (1152bp) protein (384aa)
L-lactate dehydrogenase (cytochrome) (EC:1.1.2.3); K00101 L-lactate dehydrogenase (cytochrome) [EC:1.1.2.3]
alpha-hydroxy acid dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000367199B
L-lactate dehydrogenase {ECO:0000313|EMBL:GAD23626.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1272_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12821..14473
DNA (1653bp) protein (551aa)
acetolactate synthase (EC:2.2.1.6); K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003654DA4
Acetolactate synthase {ECO:0000313|EMBL:GAD23627.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1272_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14489..14989)
DNA (501bp) protein (167aa)
Putative lipoprotein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0T4_ALIDB
lipoprotein
Putative lipoprotein {ECO:0000313|EMBL:ADV01135.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1272_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15033..15251
DNA (219bp) protein (73aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U0T5_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO24756.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1272_curated_16
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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15354..16151
DNA (798bp) protein (266aa)
Condensin subunit ScpA n=1 Tax=Acidovorax sp. KKS102 RepID=K0HX14_9BURK
condensin subunit ScpA
Segregation and condensation protein A {ECO:0000256|SAAS:SAAS00093938}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_1272_curated_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16174..17766
DNA (1593bp) protein (531aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
l-aspartate oxidase (EC:1.4.3.16); K00278 L-aspartate oxidase [EC:1.4.3.16]
L-aspartate oxidase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CD7D7
scnpilot_p_inoc_scaffold_1272_curated_18
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(17892..18920)
DNA (1029bp) protein (343aa)
Gram-negative type outer membrane porin protein n=1 Tax=Comamonas testosteroni (strain CNB-2) RepID=D0J5V9_COMT2
Porin {ECO:0000313|EMBL:KGH30365.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
outer membrane porin protein
scnpilot_p_inoc_scaffold_1272_curated_19
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19125..19505
DNA (381bp) protein (127aa)
aspartate alpha-decarboxylase (EC:4.1.1.11); K01579 aspartate 1-decarboxylase [EC:4.1.1.11]
Aspartate 1-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; EC=4.1.1.11 {ECO:0000255|HAMAP-Rule:MF_00446};; Aspartate alpha-decarboxylase {ECO:0000255|HAMAP-Rule:MF_00446}; Contains:; Aspartate 1-decarboxylase beta chain {ECO:0000255|HAMAP-Rule:MF_00446}; Contains:; Aspartate 1-decarboxylase alpha chain {ECO:0000255|HAMAP-Rule:MF_00446}; Flags: Precursor;; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).
Aspartate 1-decarboxylase n=2 Tax=Acidovorax RepID=PAND_ACIET
scnpilot_p_inoc_scaffold_1272_curated_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19529..19888
DNA (360bp) protein (120aa)
5-carboxymethyl-2-hydroxymuconate isomerase; K01826 5-carboxymethyl-2-hydroxymuconate isomerase [EC:5.3.3.10]
5-carboxymethyl-2-hydroxymuconate isomerase n=4 Tax=Delftia RepID=A9BV09_DELAS
5-carboxymethyl-2-hydroxymuconate isomerase {ECO:0000313|EMBL:EPD36935.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_p_inoc_scaffold_1272_curated_21
Delftia sp. RIT313, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19969..20541
DNA (573bp) protein (191aa)
DTW domain containing protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BV08_DELAS
DTW domain-containing protein
DTW domain containing protein {ECO:0000313|EMBL:EZP49655.1}; TaxID=1468410 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. RIT313.;"
scnpilot_p_inoc_scaffold_1272_curated_22
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20550..21065)
DNA (516bp) protein (172aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI0002378604
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_1272_curated_23
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21191..22813)
DNA (1623bp) protein (541aa)
response regulator receiver domain-containing protein id=12552666 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
response regulator receiver domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1272_curated_24
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(22829..23524)
DNA (696bp) protein (232aa)
histidine kinase id=12549828 bin=BDI species=unknown genus=Rhodoferax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1272_curated_25
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23717..25492)
DNA (1776bp) protein (592aa)
para-aminobenzoate synthase subunit I; K03342 para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase [EC:2.6.1.85 4.1.3.38]
Para-aminobenzoate synthase, subunit I n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WBI4_ACISJ
Para-aminobenzoate synthase, subunit I {ECO:0000313|EMBL:ABM43609.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_1272_curated_26
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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25676..26812
DNA (1137bp) protein (379aa)
Branched-chain amino acid transport system substrate-binding protein n=2 Tax=Delftia acidovorans RepID=S2WG83_DELAC
Branched-chain amino acid transport system substrate-binding protein {ECO:0000313|EMBL:EPD42181.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1272_curated_27
Azoarcus sp. KH32C, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(26878..28656)
DNA (1779bp) protein (593aa)
Uncharacterized protein n=1 Tax=Azoarcus sp. KH32C RepID=H0Q190_9RHOO
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAL23690.1}; TaxID=748247 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. KH32C.;"
scnpilot_p_inoc_scaffold_1272_curated_28
unknown

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comp(28739..28864)
DNA (126bp) protein (42aa)

This feature has no annotations

Displaying 28 items

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