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scnpilot_p_inoc_scaffold_1721_curated

Search features with annotation key words

Displaying items 1-30 of 44 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1721_curated_1
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3..542
DNA (540bp) protein (180aa)
GntR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I198_9BURK
GntR family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_1721_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

542..742
DNA (201bp) protein (67aa)
SlyX family protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CFDF1
SlyX family protein {ECO:0000313|EMBL:GAD24246.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SlyX family protein; K03745 SlyX protein
scnpilot_p_inoc_scaffold_1721_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

756..1217
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B9E30
uncharacterized LOC100495505
Uncharacterized protein {ECO:0000313|EMBL:GAD24242.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1721_curated_4
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1226..1456
DNA (231bp) protein (77aa)
Uncharacterized protein n=2 Tax=Delftia RepID=A9BVW7_DELAS
hypothetical protein; K09954 hypothetical protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_1721_curated_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1541..1963)
DNA (423bp) protein (141aa)
Globin-like protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TMH1_ACIAC
globin-like protein; K06886 hemoglobin
Globin-like protein {ECO:0000313|EMBL:ABM32159.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_1721_curated_6
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1989..2705)
DNA (717bp) protein (239aa)
Iron-sulfur cluster repair di-iron protein n=2 Tax=Alicycliphilus denitrificans RepID=F4GC47_ALIDK
iron-sulfur cluster repair di-iron protein; K07322 regulator of cell morphogenesis and NO signaling
Iron-sulfur cluster repair di-iron protein {ECO:0000313|EMBL:AEB83621.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1721_curated_7
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2804..3283
DNA (480bp) protein (160aa)
Transcriptional regulator, Rrf2 family n=2 Tax=Alicycliphilus denitrificans RepID=E8TZD0_ALIDB
transcriptional regulator, rrf2 family; K13771 Rrf2 family transcriptional regulator, nitric oxide-sensitive transcriptional repressor
Transcriptional regulator, BadM/Rrf2 family {ECO:0000313|EMBL:AEB83622.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1721_curated_8
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3345..4268)
DNA (924bp) protein (308aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAL2_ACISJ
chromosome replication initiation inhibitor protein; K05596 LysR family transcriptional regulator, chromosome initiation inhibitor
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM43287.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_1721_curated_9
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4339..4986
DNA (648bp) protein (216aa)
Lysine exporter protein (LYSE/YGGA) n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MD12_ACIET
lysine exporter protein LysE/YggA; K06895 L-lysine exporter family protein LysE/ArgO
Lysine exporter protein (LYSE/YGGA) {ECO:0000313|EMBL:ACM33944.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1721_curated_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5080..5868)
DNA (789bp) protein (263aa)
Lipoprotein, YaeC family n=2 Tax=Acidovorax RepID=A1WAL0_ACISJ
lipoprotein; K02073 D-methionine transport system substrate-binding protein
Lipoprotein, YaeC family {ECO:0000313|EMBL:ACM33943.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1721_curated_11
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6095..6808)
DNA (714bp) protein (238aa)
Phosphoserine phosphatase SerB n=1 Tax=Acidovorax sp. KKS102 RepID=K0HUU4_9BURK
phosphoserine phosphatase SerB
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_1721_curated_12
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6880..7050)
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E8_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59949.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_1721_curated_13
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7142..7813)
DNA (672bp) protein (224aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I663_9BURK
hypothetical protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_1721_curated_14
unknown

Not on your lists

7886..8104
DNA (219bp) protein (73aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1721_curated_15
unknown

Not on your lists

8395..9306
DNA (912bp) protein (304aa)
hypothetical protein n=1 Tax=Blastomonas sp. AAP53 RepID=UPI00037AA054
scnpilot_p_inoc_scaffold_1721_curated_16
unknown

Not on your lists

9324..9950
DNA (627bp) protein (209aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1721_curated_17
unknown

Not on your lists

10012..10653
DNA (642bp) protein (214aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1721_curated_18
Sphingomonas wittichii, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10665..13265)
DNA (2601bp) protein (867aa)
hypothetical protein n=1 Tax=Sphingomonas wittichii RepID=UPI0002EA1962
regulatory protein LuxR
Regulatory protein, LuxR {ECO:0000313|EMBL:ABQ68882.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;"
scnpilot_p_inoc_scaffold_1721_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13274..16744)
DNA (3471bp) protein (1157aa)
transcription-repair coupling factor; K03723 transcription-repair coupling factor (superfamily II helicase) [EC:3.6.4.-]
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Transcription-repair-coupling factor n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDB8_ALIDK
scnpilot_p_inoc_scaffold_1721_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16815..17639
DNA (825bp) protein (275aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60); K00991 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [EC:2.7.7.60]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108, ECO:0000256|SAAS:SAAS00030493};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDB7_ALIDK
scnpilot_p_inoc_scaffold_1721_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17650..18141
DNA (492bp) protein (164aa)
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12); K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12] id=12552705 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; K01770 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [EC:4.6.1.12]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1721_curated_22
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18223..19719)
DNA (1497bp) protein (499aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Histidine kinase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E3_ACIDE
integral membrane sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_1721_curated_23
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19785..20516)
DNA (732bp) protein (244aa)
UPI0003D3DCEE related cluster n=1 Tax=unknown RepID=UPI0003D3DCEE
Osmolarity response regulator {ECO:0000313|EMBL:GAD24864.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ompR; osmolarity response regulator; K07659 two-component system, OmpR family, phosphate regulon response regulator OmpR
scnpilot_p_inoc_scaffold_1721_curated_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20770..21450
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6E1_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59942.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1721_curated_25
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21521..22303)
DNA (783bp) protein (261aa)
3-hydroxybutyrate dehydrogenase {ECO:0000313|EMBL:EHL21485.1}; EC=1.1.1.30 {ECO:0000313|EMBL:EHL21485.1};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
3-hydroxybutyrate dehydrogenase (EC:1.1.1.30)
3-hydroxybutyrate dehydrogenase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1C2_9BURK
scnpilot_p_inoc_scaffold_1721_curated_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22374..23303
DNA (930bp) protein (310aa)
Alpha/beta hydrolase fold protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I115_9BURK
uncharacterized LOC100490292
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1721_curated_27
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23300..25528
DNA (2229bp) protein (743aa)
(p)ppGpp synthetase I SpoT/RelA (EC:2.7.6.5); K00951 GTP pyrophosphokinase [EC:2.7.6.5]
GTP pyrophosphokinase n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2XZ10_DELAC
GTP pyrophosphokinase {ECO:0000313|EMBL:EPD44739.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
scnpilot_p_inoc_scaffold_1721_curated_28
Aeromonas hydrophila, Aeromonas, Aeromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26087..26383
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Aeromonas hydrophila SSU RepID=K1JL41_AERHY
Uncharacterized protein {ECO:0000313|EMBL:EKB27263.1}; TaxID=1073377 species="Bacteria; Proteobacteria; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.;" source="Aeromonas hydrophila SSU.;"
putative vacuolar-type H+ATPase subunit A
scnpilot_p_inoc_scaffold_1721_curated_29
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26415..28307)
DNA (1893bp) protein (631aa)
tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; K15461 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein [EC:2.1.1.61 1.5.-.-]
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QBI0_ACIAP
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_1721_curated_30
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28404..29072)
DNA (669bp) protein (223aa)
Uncharacterized protein family UPF0126 n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6AVV3_DELSC
hypothetical protein
Uncharacterized protein family UPF0126 {ECO:0000313|EMBL:AEF89186.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
Displaying items 1-30 of 44 in total

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