ggKbase home page

scnpilot_p_inoc_scaffold_2071_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2071_curated_1
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1..675)
DNA (675bp) protein (225aa)
glutamate--tRNA ligase (EC:6.1.1.17); K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Glutamyl-Q tRNA(Asp) synthetase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJA1_ACIET
scnpilot_p_inoc_scaffold_2071_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(672..1748)
DNA (1077bp) protein (359aa)
FAD dependent oxidoreductase id=12552012 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
amine oxidase; K06955
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2071_curated_3
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1951..2358
DNA (408bp) protein (136aa)
OsmC family protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6D5_ACIDE
OsmC family protein {ECO:0000313|EMBL:EER59969.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
OsmC family protein
scnpilot_p_inoc_scaffold_2071_curated_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2355..3251
DNA (897bp) protein (299aa)
Pirin-like protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0C1U6_9BURK
Pirin-like protein {ECO:0000313|EMBL:EHL21468.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
pirin domain-containing protein; K06911
scnpilot_p_inoc_scaffold_2071_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3335..4183)
DNA (849bp) protein (283aa)
cobyrinic acid a,c-diamide synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037478B6
Site-determining protein {ECO:0000256|PIRNR:PIRNR003092}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cobyrinic acid ac-diamide synthase
scnpilot_p_inoc_scaffold_2071_curated_6
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4180..4920)
DNA (741bp) protein (247aa)
Diguanylate cyclase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6D1_ACIDE
response regulator pleD-like
Diguanylate cyclase {ECO:0000313|EMBL:EER59965.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_2071_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4976..6670)
DNA (1695bp) protein (565aa)
sulfate transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037979C2
Sulphate transporter {ECO:0000313|EMBL:GAD23534.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
sulfate transporter
scnpilot_p_inoc_scaffold_2071_curated_8
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6829..7365
DNA (537bp) protein (179aa)
Transport protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HSI1_9BURK
Transporter {ECO:0000313|EMBL:KJA12195.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
transporter
scnpilot_p_inoc_scaffold_2071_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7415..8638
DNA (1224bp) protein (408aa)
Cystathionine beta-lyase (EC:4.4.1.8); K01760 cystathionine beta-lyase [EC:4.4.1.8]
Cys/Met metabolism pyridoxal-phosphate-dependent protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRR5_ALIDB
Cys/Met metabolism pyridoxal-phosphate-dependent protein {ECO:0000313|EMBL:ADV00279.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2071_curated_10
Pseudomonas sp. GM25, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8720..9049
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Pseudomonas sp. GM25 RepID=J2PHB6_9PSED
Uncharacterized protein {ECO:0000313|EMBL:EJM29546.1}; TaxID=1144327 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM25.;"
transcription repressor protein
scnpilot_p_inoc_scaffold_2071_curated_11
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9027..9317
DNA (291bp) protein (97aa)
Helix-turn-helix domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VJ81_POLNA
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ABM35709.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_p_inoc_scaffold_2071_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9587..10348
DNA (762bp) protein (254aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRR4_ALIDB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2071_curated_13
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10340..10981)
DNA (642bp) protein (214aa)
G-D-S-L family lipolytic protein; K10804 acyl-CoA thioesterase I [EC:3.1.2.- 3.1.1.5]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036F3F74
Arylesterase {ECO:0000313|EMBL:GAD23531.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_2071_curated_14
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11000..11704
DNA (705bp) protein (235aa)
ABC transporter n=1 Tax=Chryseobacterium taeanense RepID=UPI000303485A
uncharacterized ABC transporter ATP-binding protein ybbA-like
ABC transporter {ECO:0000313|EMBL:KEH13384.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
scnpilot_p_inoc_scaffold_2071_curated_15
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11806..12066
DNA (261bp) protein (87aa)
Regulator protein FrmR n=1 Tax=Achromobacter piechaudii HLE RepID=J4QM68_9BURK
frmR; regulator protein FrmR
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
scnpilot_p_inoc_scaffold_2071_curated_16
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12088..13200
DNA (1113bp) protein (371aa)
S-(hydroxymethyl)glutathione dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000375A47A
s-(hydroxymethyl)glutathione dehydrogenase-like
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
scnpilot_p_inoc_scaffold_2071_curated_17
Sphaerotilus natans, Sphaerotilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13524..14354
DNA (831bp) protein (277aa)
fghA; S-formylglutathione hydrolase (EC:3.1.2.12); K01070 S-formylglutathione hydrolase [EC:3.1.2.12]
S-formylglutathione hydrolase n=1 Tax=Brachymonas chironomi RepID=UPI00037318FE
S-formylglutathione hydrolase {ECO:0000313|EMBL:KDB50807.1}; TaxID=1286631 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Sphaerotilus.;" source="Sphaerotilus natans subsp. natans DSM 6575.;"
scnpilot_p_inoc_scaffold_2071_curated_18
Burkholderia terrae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14367..15179)
DNA (813bp) protein (271aa)
Linocin_M18 bacteriocin protein n=1 Tax=Burkholderia terrae BS001 RepID=I5CHJ7_9BURK
Linocin_M18 bacteriocin protein {ECO:0000313|EMBL:EIM95365.1}; TaxID=1171375 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia terrae BS001.;"
Linocin_M18 bacteriocin protein
scnpilot_p_inoc_scaffold_2071_curated_19
Lautropia mirabilis, Lautropia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15220..16281)
DNA (1062bp) protein (354aa)
Dyp-type peroxidase family protein n=1 Tax=Lautropia mirabilis ATCC 51599 RepID=E7RYM1_9BURK
Dyp-type peroxidase family protein {ECO:0000313|EMBL:EFV94529.1}; TaxID=887898 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Lautropia.;" source="Lautropia mirabilis ATCC 51599.;"
Dyp-type peroxidase family protein; K07223 putative iron-dependent peroxidase
scnpilot_p_inoc_scaffold_2071_curated_20
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16349..17104
DNA (756bp) protein (252aa)
RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB {ECO:0000256|HAMAP-Rule:MF_01887}; EC=2.1.1.185 {ECO:0000256|HAMAP-Rule:MF_01887};; 23S rRNA (guanosine2251 2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; 23S rRNA Gm2251 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01887}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIP9_ACIET
scnpilot_p_inoc_scaffold_2071_curated_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17115..17849
DNA (735bp) protein (245aa)
silent information regulator protein sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
NAD-dependent protein deacylase {ECO:0000256|HAMAP-Rule:MF_01121}; EC=3.5.1.- {ECO:0000256|HAMAP-Rule:MF_01121};; Regulatory protein SIR2 homolog {ECO:0000256|HAMAP-Rule:MF_01121}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
NAD-dependent protein deacylase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIQ5_ACIET
scnpilot_p_inoc_scaffold_2071_curated_22
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17854..18192
DNA (339bp) protein (113aa)
multidrug transporter n=1 Tax=Burkholderia bryophila RepID=UPI0003719899
Methyl viologen resistance protein C {ECO:0000313|EMBL:EWS64533.1}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
small multidrug resistance protein; K03297 small multidrug resistance protein, SMR family
scnpilot_p_inoc_scaffold_2071_curated_23
unknown

Not on your lists

comp(18199..19101)
DNA (903bp) protein (301aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI0003141232
scnpilot_p_inoc_scaffold_2071_curated_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19262..21136
DNA (1875bp) protein (625aa)
adenylate/guanylate cyclase with Chase sensor; K01768 adenylate cyclase [EC:4.6.1.1]
Adenylate/guanylate cyclase with Chase sensor n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7E0_ACIDE
Adenylate/guanylate cyclase with Chase sensor {ECO:0000313|EMBL:EER59615.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_2071_curated_25
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21174..21680
DNA (507bp) protein (169aa)
SH3 type 3 domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7D9_ACIDE
SH3 type 3 domain protein {ECO:0000313|EMBL:EER59614.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2071_curated_26
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21677..22612
DNA (936bp) protein (312aa)
Peptidase M48 Ste24p n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7D8_ACIDE
Peptidase M48 Ste24p {ECO:0000313|EMBL:EER59613.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
peptidase M48 Ste24p
scnpilot_p_inoc_scaffold_2071_curated_27
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22685..22891)
DNA (207bp) protein (69aa)
hypothetical protein n=1 Tax=Acidovorax avenae RepID=UPI0003825DF1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADX46693.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_2071_curated_28
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22952..23545)
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IA07_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU45951.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2071_curated_29
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23545..24255)
DNA (711bp) protein (237aa)
monosaccharide-transporting ATPase (EC:3.6.3.17); K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYJ0_ALIDB
ABC transporter related protein {ECO:0000313|EMBL:ADV00888.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2071_curated_30
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24255..25025)
DNA (771bp) protein (257aa)
sulfate-transporting ATPase (EC:3.6.3.25); K01995 branched-chain amino acid transport system ATP-binding protein
Sulfate-transporting ATPase {ECO:0000313|EMBL:AEB83686.1}; EC=3.6.3.25 {ECO:0000313|EMBL:AEB83686.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TYI9_ALIDB
Displaying items 1-30 of 31 in total

View Taxonomy