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scnpilot_p_inoc_scaffold_2258_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2258_curated_1
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2..985)
DNA (984bp) protein (328aa)
glycine/betaine ABC transporter n=1 Tax=Comamonas sp. B-9 RepID=UPI000395996D
proX; glycine betaine transporter periplasmic subunit; K02002 glycine betaine/proline transport system substrate-binding protein
Substrate-binding region of ABC-type glycine betaine transport system {ECO:0000313|EMBL:ACM32457.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2258_curated_2
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1015..2343)
DNA (1329bp) protein (443aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q3S8_ACIAP
binding-protein-dependent transport system inner membrane protein; K02001 glycine betaine/proline transport system permease protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ADX45456.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_2258_curated_3
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2340..3599)
DNA (1260bp) protein (420aa)
glycine/betaine/L-proline ABC transporter ATPase (EC:3.6.3.32); K02000 glycine betaine/proline transport system ATP-binding protein [EC:3.6.3.32]
Glycine betaine/L-proline ABC transporter, ATPase subunit {ECO:0000313|EMBL:ADX45457.1}; EC=3.6.3.32 {ECO:0000313|EMBL:ADX45457.1};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
glycine/betaine ABC transporter ATP-binding protein n=1 Tax=Acidovorax avenae RepID=UPI00031195E2
scnpilot_p_inoc_scaffold_2258_curated_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4391..6388
DNA (1998bp) protein (666aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
acetate/CoA ligase (EC:6.2.1.1); K01895 acetyl-CoA synthetase [EC:6.2.1.1]
acetyl-CoA synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036114D4
scnpilot_p_inoc_scaffold_2258_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6519..6821)
DNA (303bp) protein (101aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8U0L2_ALIDB
cytochrome c-552-like
Cytochrome c-551 {ECO:0000313|EMBL:GAO21211.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_2258_curated_6
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6928..7170
DNA (243bp) protein (81aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TMA6_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM32094.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_2258_curated_7
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7368..9224
DNA (1857bp) protein (619aa)
dihydroxy-acid dehydratase (EC:4.2.1.9); K01687 dihydroxy-acid dehydratase [EC:4.2.1.9]
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Dihydroxy-acid dehydratase n=2 Tax=Alicycliphilus denitrificans RepID=E8U061_ALIDB
scnpilot_p_inoc_scaffold_2258_curated_8
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9293..9790
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Ralstonia pickettii OR214 RepID=R0CRK0_RALPI
Uncharacterized protein {ECO:0000313|EMBL:ENZ79181.1}; TaxID=1264675 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii OR214.;"
flavodoxin/nitric oxide synthase
scnpilot_p_inoc_scaffold_2258_curated_9
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9882..10361)
DNA (480bp) protein (160aa)
Bacterioferritin n=2 Tax=Acidovorax RepID=A1W4Y4_ACISJ
bacterioferritin-like
Bacterioferritin {ECO:0000256|RuleBase:RU000623}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_2258_curated_10
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10557..11372
DNA (816bp) protein (272aa)
Prolipoprotein diacylglyceryl transferase {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117220}; EC=2.4.99.- {ECO:0000256|HAMAP-Rule:MF_01147, ECO:0000256|SAAS:SAAS00117311};; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
prolipoprotein diacylglyceryl transferase; K13292 phosphatidylglycerol:prolipoprotein diacylglycerol transferase [EC:2.-.-.-]
Prolipoprotein diacylglyceryl transferase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0I8_ACIDE
scnpilot_p_inoc_scaffold_2258_curated_11
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11434..12882
DNA (1449bp) protein (483aa)
Malonyl-CoA decarboxylase {ECO:0000313|EMBL:EER62003.1}; EC=4.1.1.9 {ECO:0000313|EMBL:EER62003.1};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
malonyl-CoA decarboxylase (EC:4.1.1.9); K01578 malonyl-CoA decarboxylase [EC:4.1.1.9]
Malonyl-CoA decarboxylase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T0I5_ACIDE
scnpilot_p_inoc_scaffold_2258_curated_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12922..13734
DNA (813bp) protein (271aa)
enoyl-CoA hydratase/isomerase id=12552947 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Enoyl-CoA hydratase {ECO:0000313|EMBL:KJA10364.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
enoyl-CoA hydratase/isomerase
scnpilot_p_inoc_scaffold_2258_curated_13
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13756..15321
DNA (1566bp) protein (522aa)
AMP-dependent synthetase and ligase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W4Z0_ACISJ
malonyl-CoA synthase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABM41315.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_2258_curated_14
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15379..16848)
DNA (1470bp) protein (490aa)
Major facilitator superfamily MFS_1 n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BZQ8_DELAS
major facilitator transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABX35966.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_p_inoc_scaffold_2258_curated_15
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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16916..17827
DNA (912bp) protein (304aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI0002376D49
Transcriptional regulator {ECO:0000313|EMBL:EJE48913.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_2258_curated_16
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17847..18878)
DNA (1032bp) protein (344aa)
NADPH:quinone reductase (EC:1.6.5.5)
Alcohol dehydrogenase zinc-binding domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TX01_ALIDB
NADPH:quinone reductase {ECO:0000313|EMBL:GAO25502.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_2258_curated_17
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19067..20161)
DNA (1095bp) protein (365aa)
Porin Gram-negative type n=1 Tax=Comamonas testosteroni KF-1 RepID=B7X3I8_COMTE
Porin Gram-negative type {ECO:0000313|EMBL:EED66669.1}; Flags: Precursor;; TaxID=399795 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni KF-1.;"
outer membrane porin protein
scnpilot_p_inoc_scaffold_2258_curated_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20203..21381)
DNA (1179bp) protein (393aa)
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein id=12553236 bin=BDI species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
extracellular ligand-binding receptor; K01999 branched-chain amino acid transport system substrate-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2258_curated_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21418..22122)
DNA (705bp) protein (235aa)
ABC transporter-like protein id=12553235 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2258_curated_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22119..22841)
DNA (723bp) protein (241aa)
ABC transporter-like protein id=12553234 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2258_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22838..23815)
DNA (978bp) protein (326aa)
inner-membrane translocator id=12553233 bin=BDI species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2258_curated_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23832..24683)
DNA (852bp) protein (284aa)
inner-membrane translocator id=12553232 bin=BDI species=Verminephrobacter eiseniae genus=Verminephrobacter taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2258_curated_23
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(24794..25579)
DNA (786bp) protein (262aa)
enoyl-CoA hydratase/isomerase; K01692 enoyl-CoA hydratase [EC:4.2.1.17]
enoyl-CoA hydratase/isomerase id=12553231 bin=BDI species=Polaromonas naphthalenivorans genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
scnpilot_p_inoc_scaffold_2258_curated_24
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(25593..27257)
DNA (1665bp) protein (555aa)
cyclohexanecarboxylate-CoA ligase (EC:6.2.1.26); K04116 cyclohexanecarboxylate-CoA ligase [EC:6.2.1.-]
Cyclohexanecarboxylate-CoA ligase {ECO:0000313|EMBL:AEB86424.1}; EC=6.2.1.26 {ECO:0000313|EMBL:AEB86424.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Cyclohexanecarboxylate-CoA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G578_ALIDK
Displaying 24 items

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