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scnpilot_p_inoc_scaffold_2025_curated

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Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2025_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1360)
DNA (1359bp) protein (453aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TU12_ALIDB
hypothetical protein; K09760 DNA recombination protein RmuC
RmuC-domain-containing protein {ECO:0000313|EMBL:GAO22603.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_2025_curated_2
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1435..2418)
DNA (984bp) protein (328aa)
2-hydroxyacid dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI0002376A51
glyoxylate reductase-like
D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding protein {ECO:0000313|EMBL:ABM33865.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_2025_curated_3
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2437..3846)
DNA (1410bp) protein (470aa)
Putative transmembrane protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T237_ACIDE
Sodium:proton antiporter {ECO:0000313|EMBL:KJA11668.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2025_curated_4
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3867..5051)
DNA (1185bp) protein (395aa)
nicotinate phosphoribosyltransferase; K00763 nicotinate phosphoribosyltransferase [EC:2.4.2.11]
Nicotinate phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838}; Short=NAPRTase {ECO:0000256|HAMAP-Rule:MF_00570};; EC=6.3.4.21 {ECO:0000256|HAMAP-Rule:MF_00570, ECO:0000256|RuleBase:RU003838};; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Nicotinate phosphoribosyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TU09_ALIDB
scnpilot_p_inoc_scaffold_2025_curated_5
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5143..5601)
DNA (459bp) protein (153aa)
Thioesterase superfamily protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T239_ACIDE
uncharacterized LOC100487229
Thioesterase superfamily protein {ECO:0000313|EMBL:EER61452.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_2025_curated_6
Verminephrobacter eiseniae, Verminephrobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5851..6390
DNA (540bp) protein (180aa)
Phasin family protein n=1 Tax=Verminephrobacter eiseniae (strain EF01-2) RepID=A1WKZ2_VEREI
phasin family protein
Phasin family protein {ECO:0000313|EMBL:ABM58299.1}; TaxID=391735 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Verminephrobacter.;" source="Verminephrobacter eiseniae (strain EF01-2).;"
scnpilot_p_inoc_scaffold_2025_curated_7
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6637..7401
DNA (765bp) protein (255aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transferase {ECO:0000256|HAMAP-Rule:MF_00688}; Leucyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; Phenyalanyltransferase {ECO:0000256|HAMAP-Rule:MF_00688}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
aat; leucyl/phenylalanyl-tRNA--protein transferase (EC:2.3.2.6); K00684 leucyl/phenylalanyl-tRNA--protein transferase [EC:2.3.2.6]
Leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Acidovorax sp. CF316 RepID=J1EDN0_9BURK
scnpilot_p_inoc_scaffold_2025_curated_8
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7398..8159
DNA (762bp) protein (254aa)
arginyl-tRNA-protein transferase (EC:2.3.2.8)
Putative arginyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194293}; Short=Arginyltransferase {ECO:0000256|HAMAP-Rule:MF_00689};; Short=R-transferase {ECO:0000256|HAMAP-Rule:MF_00689};; EC=2.3.2.8 {ECO:0000256|HAMAP-Rule:MF_00689, ECO:0000256|SAAS:SAAS00194290};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Putative arginyl-tRNA--protein transferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0B8_9BURK
scnpilot_p_inoc_scaffold_2025_curated_9
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8195..9001
DNA (807bp) protein (269aa)
IclR family transcriptional regulator n=1 Tax=Acidovorax radicis RepID=UPI000237517A
IclR family transcriptional regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_2025_curated_10
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9097..10455)
DNA (1359bp) protein (453aa)
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ASH2_DELSC
nitrilotriacetate monooxygenase family FMN-dependent oxidoreductase
FMN-dependent oxidoreductase, nitrilotriacetate monooxygenase family {ECO:0000313|EMBL:AEF91836.1}; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
scnpilot_p_inoc_scaffold_2025_curated_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10488..11774)
DNA (1287bp) protein (429aa)
SfnB family sulfur acquisition oxidoreductase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WVE7_DELAC
acyl-CoA dehydrogenase type 2
Acyl-CoA dehydrogenase type 2 domain {ECO:0000313|EMBL:ABX34420.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_p_inoc_scaffold_2025_curated_12
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11783..13051)
DNA (1269bp) protein (423aa)
SfnB family sulfur acquisition oxidoreductase n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2WAN4_DELAC
SfnB family sulfur acquisition oxidoreductase {ECO:0000313|EMBL:EPD36798.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
acyl-CoA dehydrogenase type 2
scnpilot_p_inoc_scaffold_2025_curated_13
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13355..14017)
DNA (663bp) protein (221aa)
Binding-protein-dependent transport systems inner membrane component n=4 Tax=Delftia RepID=A9BUW0_DELAS
ABC transporter permease; K02072 D-methionine transport system permease protein
Binding--dependent transport system inner membrane component family protein {ECO:0000313|EMBL:KFJ10093.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
scnpilot_p_inoc_scaffold_2025_curated_14
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13989..15176)
DNA (1188bp) protein (396aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02071 D-methionine transport system ATP-binding protein
Methionine import ATP-binding protein MetN {ECO:0000256|HAMAP-Rule:MF_01719}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01719};; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
ABC transporter related n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BUW1_DELAS
scnpilot_p_inoc_scaffold_2025_curated_15
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15166..15999)
DNA (834bp) protein (278aa)
D-methionine binding lipoprotein, ABC-type metal ion transport system n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KR18_9BURK
D-methionine binding lipoprotein, ABC-type metal ion transport system {ECO:0000313|EMBL:EGI77719.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
NLPA lipoprotein; K02073 D-methionine transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2025_curated_16
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16033..16839)
DNA (807bp) protein (269aa)
NLPA lipoprotein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KR19_9BURK
NLPA lipoprotein {ECO:0000313|EMBL:EGI77720.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
NLPA lipoprotein; K02073 D-methionine transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2025_curated_17
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16890..17717)
DNA (828bp) protein (276aa)
D-methionine transport system substrate-binding protein n=2 Tax=Delftia acidovorans RepID=S2WCH9_DELAC
NMT1/THI5 like family protein {ECO:0000313|EMBL:KFJ10771.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
NLPA lipoprotein; K02073 D-methionine transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2025_curated_18
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17902..18984)
DNA (1083bp) protein (361aa)
TRAP dicarboxylate transporter-DctP subunit n=2 Tax=Acidovorax RepID=A1W4V0_ACISJ
TRAP dicarboxylate transporter subunit DctP
TRAP dicarboxylate transporter-DctP subunit {ECO:0000313|EMBL:ACM32435.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2025_curated_19
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19389..21251)
DNA (1863bp) protein (621aa)
deoxyxylulose-5-phosphate synthase; K01662 1-deoxy-D-xylulose-5-phosphate synthase [EC:2.2.1.7]
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Alicycliphilus denitrificans RepID=E8U276_ALIDB
scnpilot_p_inoc_scaffold_2025_curated_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21480..22409)
DNA (930bp) protein (310aa)
Geranyltranstransferase; K00795 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
Geranyltranstransferase (Farnesyl-diphosphate synthase)-like protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5Y2N3_RAMTT
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2025_curated_21
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22394..22636)
DNA (243bp) protein (81aa)
exodeoxyribonuclease VII small subunit; K03602 exodeoxyribonuclease VII small subunit [EC:3.1.11.6]
Exodeoxyribonuclease 7 small subunit {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198685}; EC=3.1.11.6 {ECO:0000256|HAMAP-Rule:MF_00337, ECO:0000256|SAAS:SAAS00198686};; Exodeoxyribonuclease VII small subunit {ECO:0000256|HAMAP-Rule:MF_00337}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Exodeoxyribonuclease 7 small subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U274_ALIDB
scnpilot_p_inoc_scaffold_2025_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22901..24031
DNA (1131bp) protein (377aa)
Rieske (2Fe-2S) iron-sulfur domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8U273_ALIDB
putative dioxygenase subunit alpha yeaW-like
Rieske (2Fe-2S) iron-sulfur domain protein {ECO:0000313|EMBL:ADU98877.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2025_curated_23
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24192..24644
DNA (453bp) protein (151aa)
Putative uncharacterized protein n=1 Tax=Hylemonella gracilis ATCC 19624 RepID=F3KU86_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGI76636.1}; TaxID=887062 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis ATCC 19624.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2025_curated_24
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24737..25651
DNA (915bp) protein (305aa)
Putative transmembrane protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEU4_ACIET
uncharacterized LOC100494542
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_2025_curated_25
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25689..26558
DNA (870bp) protein (290aa)
3-mercaptopyruvate sulfurtransferase (EC:2.8.1.2); K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
3-mercaptopyruvate sulfurtransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BRQ5_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_2025_curated_26
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26743..27069
DNA (327bp) protein (109aa)
Flagellar transcriptional regulator FlhD n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TBV7_ACIDE
Flagellar transcriptional regulator FlhD {ECO:0000256|HAMAP-Rule:MF_00725, ECO:0000256|SAAS:SAAS00011626}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
flagellar transcriptional activator
scnpilot_p_inoc_scaffold_2025_curated_27
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27097..27648
DNA (552bp) protein (184aa)
Flagellar transcriptional regulator FlhC n=2 Tax=Comamonas testosteroni RepID=B7WYL1_COMTE
Flagellar transcriptional regulator FlhC {ECO:0000256|HAMAP-Rule:MF_01891, ECO:0000256|PIRNR:PIRNR003159}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
flagellar transcriptional activator, FlhC; K02402 flagellar transcriptional activator FlhC
scnpilot_p_inoc_scaffold_2025_curated_28
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27887..28423)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TBV9_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER58040.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2025_curated_29
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28420..29142)
DNA (723bp) protein (241aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BRQ1_9BURK
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2025_curated_30
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29271..32108)
DNA (2838bp) protein (946aa)
phosphoenolpyruvate carboxylase (EC:4.1.1.31) id=12551006 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
phosphoenolpyruvate carboxylase (EC:4.1.1.31); K01595 phosphoenolpyruvate carboxylase [EC:4.1.1.31]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 1-30 of 35 in total

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