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scnpilot_p_inoc_scaffold_1609_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1609_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..183
DNA (183bp) protein (61aa)
isocitrate dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036A856C
isocitrate dehydrogenase [NADP]-like
Isocitrate dehydrogenase {ECO:0000313|EMBL:GAD21965.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1609_curated_2
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(291..743)
DNA (453bp) protein (151aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TSL7_ALIDB
hypothetical protein; K09005 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFJ09689.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
scnpilot_p_inoc_scaffold_1609_curated_3
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(845..1054)
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J0K8H8_9BURK
Uncharacterized protein {ECO:0000313|EMBL:GAO22918.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1609_curated_4
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1257..2516
DNA (1260bp) protein (420aa)
isocitrate dehydrogenase (EC:1.1.1.42); K00031 isocitrate dehydrogenase [EC:1.1.1.42]
Isocitrate dehydrogenase [NADP] {ECO:0000256|RuleBase:RU004446}; EC=1.1.1.42 {ECO:0000256|RuleBase:RU004446};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Isocitrate dehydrogenase [NADP] n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W884_ACISJ
scnpilot_p_inoc_scaffold_1609_curated_5
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2788..3087
DNA (300bp) protein (100aa)
Transposase of ISCARN38, ORFA, IS5 family IS427 group n=1 Tax=mine drainage metagenome RepID=E6PSA5_9ZZZZ
Transposase IS4 {ECO:0000313|EMBL:KGG86164.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
transposase of ISThsp21, IS5 family IS427 group, ORFA
scnpilot_p_inoc_scaffold_1609_curated_6
Janthinobacterium sp. Marseille, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3353..5785)
DNA (2433bp) protein (811aa)
TonB-dependent siderophore receptor n=1 Tax=Janthinobacterium sp. (strain Marseille) RepID=A6SXA8_JANMA
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ABR91107.1}; TaxID=375286 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium sp. (strain Marseille) (Minibacterium massiliensis).;"
scnpilot_p_inoc_scaffold_1609_curated_7
Achromobacter xylosoxidans, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5891..6919)
DNA (1029bp) protein (343aa)
FecR family protein 9 n=1 Tax=Achromobacter xylosoxidans (strain A8) RepID=E3HNJ6_ACHXA
FecR family protein; K07165 transmembrane sensor
FecR family protein 9 {ECO:0000313|EMBL:ADP15861.1}; TaxID=762376 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter xylosoxidans (strain A8).;"
scnpilot_p_inoc_scaffold_1609_curated_8
Achromobacter insuavis, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6940..7449)
DNA (510bp) protein (170aa)
RNA polymerase sigma factor FecI 5 n=1 Tax=Achromobacter xylosoxidans AXX-A RepID=F7T9Q8_ALCXX
RNA polymerase sigma factor FecI 5 {ECO:0000313|EMBL:EGP42941.1}; TaxID=1003200 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter insuavis AXX-A.;"
RNA polymerase sigma factor FecI; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_1609_curated_9
unknown

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7566..8225
DNA (660bp) protein (220aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1609_curated_10
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8350..9531)
DNA (1182bp) protein (394aa)
Tryptophan synthase beta chain {ECO:0000256|HAMAP-Rule:MF_00133}; EC=4.2.1.20 {ECO:0000256|HAMAP-Rule:MF_00133};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
tryptophan synthase subunit beta (EC:4.2.1.20); K06001 tryptophan synthase beta chain [EC:4.2.1.20]
Tryptophan synthase beta chain n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7J9_ACIDE
scnpilot_p_inoc_scaffold_1609_curated_11
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9868..10803
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21R92_RHOFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABD71711.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
scnpilot_p_inoc_scaffold_1609_curated_12
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10841..11737)
DNA (897bp) protein (299aa)
3-hydroxyisobutyrate dehydrogenase {ECO:0000256|RuleBase:RU910714}; Short=HIBADH {ECO:0000256|RuleBase:RU910714};; EC=1.1.1.31 {ECO:0000256|RuleBase:RU910714};; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
3-hydroxyisobutyrate dehydrogenase; K00020 3-hydroxyisobutyrate dehydrogenase [EC:1.1.1.31]
3-hydroxyisobutyrate dehydrogenase n=1 Tax=Comamonas testosteroni S44 RepID=D8D8W3_COMTE
scnpilot_p_inoc_scaffold_1609_curated_13
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11831..12214)
DNA (384bp) protein (128aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003627E5D
TfoX domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_1609_curated_14
unknown

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comp(12216..12482)
DNA (267bp) protein (89aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1609_curated_15
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12504..13670)
DNA (1167bp) protein (389aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MJD0_ACIET
acyl-CoA dehydrogenase domain-containing protein
Acyl-CoA dehydrogenase domain protein {ECO:0000313|EMBL:ACM33268.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1609_curated_16
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13783..15288)
DNA (1506bp) protein (502aa)
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
Methylmalonate-semialdehyde dehydrogenase (Acylating) {ECO:0000313|EMBL:ABM42185.1}; EC=1.2.1.27 {ECO:0000313|EMBL:ABM42185.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Methylmalonate-semialdehyde dehydrogenase (Acylating) n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W7G0_ACISJ
scnpilot_p_inoc_scaffold_1609_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15408..16298
DNA (891bp) protein (297aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRS3_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADV00287.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1609_curated_18
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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16346..16978
DNA (633bp) protein (211aa)
lysine transporter LysE n=1 Tax=Pseudomonas sp. PAMC 25886 RepID=UPI00028968BA
LysE superfamily transporter protein {ECO:0000313|EMBL:AFJ23820.1}; TaxID=303 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida (Arthrobacter siderocapsulatus).;"
amino acid transporter LysE
scnpilot_p_inoc_scaffold_1609_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16980..17864)
DNA (885bp) protein (295aa)
transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000380F3B5
Transcriptional regulator {ECO:0000313|EMBL:GAD23435.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cyclolysin secretion ATP-bindingprotein cyaB
scnpilot_p_inoc_scaffold_1609_curated_20
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18011..18856
DNA (846bp) protein (282aa)
multidrug transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003697971
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:GAD23433.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
PecM protein; K15269 probable blue pigment (indigoidine) exporter
scnpilot_p_inoc_scaffold_1609_curated_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18922..19389
DNA (468bp) protein (156aa)
peroxiredoxin n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B018E
Predicted redox protein, regulator of disulfide bond formation {ECO:0000313|EMBL:GAD23432.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
OsmC family protein
scnpilot_p_inoc_scaffold_1609_curated_22
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19694..21091
DNA (1398bp) protein (466aa)
D-serine/D-alanine/glycine transporter n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WT05_DELAC
D-serine/D-alanine/glycine transporter {ECO:0000313|EMBL:EPD42898.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
amino acid permease-associated protein; K11737 D-serine/D-alanine/glycine transporter
scnpilot_p_inoc_scaffold_1609_curated_23
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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21197..24331
DNA (3135bp) protein (1045aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(S) n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T452_ACIDE
Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:CDM25002.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
PAS/PAC and Chase sensor-containing diguanylate cyclase/phosphodiesterase
scnpilot_p_inoc_scaffold_1609_curated_24
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24481..26802
DNA (2322bp) protein (774aa)
Chromosome partition protein Smc n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIW1_ACIET
chromosome segregation protein smc; K03529 chromosome segregation protein
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Displaying 24 items

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