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scnpilot_p_inoc_scaffold_1353_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1353_curated_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..703
DNA (702bp) protein (234aa)
hypothetical protein n=1 Tax=Brachymonas chironomi RepID=UPI0003692F7A
Glycosyl transferase family 25 {ECO:0000313|EMBL:EER59681.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
glycosyl transferase family 25; K07270 glycosyl transferase, family 25
scnpilot_p_inoc_scaffold_1353_curated_2
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(800..1006)
DNA (207bp) protein (69aa)
UPI0003D3BC3D related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3BC3D
Uncharacterized protein {ECO:0000313|EMBL:KJA12107.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1353_curated_3
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1012..1950)
DNA (939bp) protein (313aa)
Branched-chain-amino-acid aminotransferase {ECO:0000313|EMBL:EWS65060.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EWS65060.1};; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
branched-chain amino acid aminotransferase (EC:2.6.1.42) id=12550516 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
branched-chain amino acid aminotransferase (EC:2.6.1.42)
scnpilot_p_inoc_scaffold_1353_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1999..2418)
DNA (420bp) protein (140aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTX4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU98077.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1353_curated_5
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2465..2908)
DNA (444bp) protein (148aa)
Transcriptional regulator, MarR family n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LIM2_RHITR
transcriptional regulator, MarR family
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
scnpilot_p_inoc_scaffold_1353_curated_6
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2974..3393)
DNA (420bp) protein (140aa)
Biopolymertransporter ExbD/TolR n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YQG3_9RHOO
Biopolymertransporter ExbD/TolR {ECO:0000313|EMBL:ENO84627.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
exbD6; putative biopolymer transport protein ExbD; K03559 biopolymer transport protein ExbD
scnpilot_p_inoc_scaffold_1353_curated_7
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3401..3832)
DNA (432bp) protein (144aa)
Biopolymer transport ExbD protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGM6_METPP
biopolymer transport ExbD protein; K03559 biopolymer transport protein ExbD
Biopolymer transport ExbD protein {ECO:0000313|EMBL:ABM94715.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
scnpilot_p_inoc_scaffold_1353_curated_8
Methylibium petroleiphilum, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3855..4613)
DNA (759bp) protein (253aa)
Biopolymer transport ExbB protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SGM5_METPP
biopolymer transport ExbB protein; K03561 biopolymer transport protein ExbB
Biopolymer transport ExbB protein {ECO:0000313|EMBL:ABM94714.1}; TaxID=420662 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium petroleiphilum (strain PM1).;"
scnpilot_p_inoc_scaffold_1353_curated_9
Burkholderia lata, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4646..5296)
DNA (651bp) protein (217aa)
Outer membrane transport energization protein TonB n=1 Tax=Burkholderia sp. (strain 383) RepID=Q39HW4_BURS3
TonB-like protein; K03832 periplasmic protein TonB
Outer membrane transport energization protein TonB {ECO:0000313|EMBL:ABB07952.1}; TaxID=482957 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R18194; / 383).;"
scnpilot_p_inoc_scaffold_1353_curated_10
Pseudomonas putida, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(5404..7281)
DNA (1878bp) protein (626aa)
ABC transporter ATP-binding protein n=1 Tax=Pseudomonas putida RepID=UPI0002DD58F8
ABC transporter-like protein
ABC transporter ATP-binding protein {ECO:0000313|EMBL:AJQ47871.1}; TaxID=1384061 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas putida S13.1.2.;"
scnpilot_p_inoc_scaffold_1353_curated_11
Pseudomonas alcaligenes, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7268..9058)
DNA (1791bp) protein (597aa)
ABC transporter ATP-binding and membrane protein (EC:3.6.3.-); K01552 [EC:3.6.3.-]
ABC transporter ATP-binding protein n=1 Tax=Pseudomonas alcaligenes OT 69 RepID=U3HAT2_PSEAC
ABC transporter ATP-binding protein {ECO:0000313|EMBL:EQM68164.1}; TaxID=1333854 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas alcaligenes OT 69.;"
scnpilot_p_inoc_scaffold_1353_curated_12
Burkholderia ubonensis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9109..10953)
DNA (1845bp) protein (615aa)
extracellular solute-binding protein, family 5, partial n=1 Tax=Burkholderia ubonensis RepID=UPI00016A5099
Bacterial extracellular solute-binding s, 5 Middle family protein {ECO:0000313|EMBL:AJX16652.1}; TaxID=1249668 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia ubonensis MSMB22.;"
extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein
scnpilot_p_inoc_scaffold_1353_curated_13
Pandoraea pnomenusa, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10950..12557)
DNA (1608bp) protein (536aa)
ABC transporter domain protein n=1 Tax=Cellvibrio japonicus (strain Ueda107) RepID=B3PJD8_CELJU
Microcin ABC transporter ATP-binding protein {ECO:0000313|EMBL:AIU29256.1}; TaxID=93220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea pnomenusa.;"
ABC transporter; K13896 microcin C transport system ATP-binding protein
scnpilot_p_inoc_scaffold_1353_curated_14
Burkholderia cepacia, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12554..13696)
DNA (1143bp) protein (381aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Burkholderia cepacia GG4 RepID=J7J657_BURCE
binding-protein-dependent transport system inner membrane protein
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:AFQ47809.1}; TaxID=1009846 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia cepacia GG4.;"
scnpilot_p_inoc_scaffold_1353_curated_15
Pandoraea sp. SD6-2, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13698..14783)
DNA (1086bp) protein (362aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Pandoraea sp. SD6-2 RepID=R7WXZ0_9BURK
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EON12088.1}; TaxID=1286093 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Pandoraea.;" source="Pandoraea sp. SD6-2.;"
binding-protein-dependent transport system inner membrane protein
scnpilot_p_inoc_scaffold_1353_curated_16
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14820..15920)
DNA (1101bp) protein (367aa)
monooxygenase n=1 Tax=Methyloversatilis universalis RepID=UPI00037F910E
Putative Monooxygenase {ECO:0000313|EMBL:EGK72718.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
monooxygenase
scnpilot_p_inoc_scaffold_1353_curated_17
Pseudomonas sp. 21, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16024..18252)
DNA (2229bp) protein (743aa)
hypothetical protein n=1 Tax=Pseudomonas nitroreducens RepID=UPI00030EA0DB
TonB-dependent receptor {ECO:0000313|EMBL:KJJ98391.1}; TaxID=1619948 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. 21.;"
putative tonB-dependent receptor protein
scnpilot_p_inoc_scaffold_1353_curated_18
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18584..19273)
DNA (690bp) protein (230aa)
Polar amino acid ABC transporter inner membrane subunit n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKF5_9BURK
Polar amino acid ABC transporter inner membrane subunit {ECO:0000313|EMBL:EGJ08823.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
putative ABC transporter permease; K02029 polar amino acid transport system permease protein
scnpilot_p_inoc_scaffold_1353_curated_19
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19273..19947)
DNA (675bp) protein (225aa)
ABC transporter permease n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LKF6_9BURK
ABC transporter permease {ECO:0000313|EMBL:EGJ08824.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
putative ABC transporter permease; K02029 polar amino acid transport system permease protein
scnpilot_p_inoc_scaffold_1353_curated_20
Rubrivivax gelatinosus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20068..20874)
DNA (807bp) protein (269aa)
Amino acid ABC transporter substrate binding protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HNR0_RUBGI
amino acid ABC transporter substrate binding protein
Amino acid ABC transporter substrate binding protein {ECO:0000313|EMBL:BAL94647.1}; TaxID=983917 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax gelatinosus (strain NBRC 100245 / IL144).;"
scnpilot_p_inoc_scaffold_1353_curated_21
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20983..22368)
DNA (1386bp) protein (462aa)
DNA repair protein radA n=2 Tax=Acidovorax RepID=A1W2G0_ACISJ
DNA repair protein RadA; K04485 DNA repair protein RadA/Sms
DNA repair protein radA {ECO:0000256|RuleBase:RU003555}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1353_curated_22
GWA2_Rhodocyclales_65_20_curated, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22660..23211
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LK07_9BURK
hypothetical protein; K07230
Tax=GWA2_Rhodocyclales_65_20_curated
scnpilot_p_inoc_scaffold_1353_curated_23
Azospira oryzae, Azospira, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23211..24704
DNA (1494bp) protein (498aa)
Carbohydrate-selective porin n=1 Tax=Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) RepID=G8QFH8_AZOSU
carbohydrate-selective porin
Carbohydrate-selective porin {ECO:0000313|EMBL:AEV26044.1}; Flags: Precursor;; TaxID=640081 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azospira.;" source="Azospira oryzae (strain ATCC BAA-33 / DSM 13638 / PS) (Dechlorosoma; suillum).;"
scnpilot_p_inoc_scaffold_1353_curated_24
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24708..25040
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRC9_RUBGI
hypothetical protein
Tax=GWA2_Gallionellales_60_18_curated
scnpilot_p_inoc_scaffold_1353_curated_25
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25044..25847
DNA (804bp) protein (268aa)
Iron permease, FTR1 family n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HRC8_RUBGI
iron permease, FTR1 family; K07243 high-affinity iron transporter
Tax=GWA2_Gallionellales_60_18_curated
scnpilot_p_inoc_scaffold_1353_curated_26
GWA2_Gallionellales_60_18_curated, Gallionellales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25849..27066
DNA (1218bp) protein (406aa)
Putative regulatory protein (Fragment) n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LK11_9BURK
polyferredoxin-like protein
Tax=GWA2_Gallionellales_60_18_curated
Displaying 26 items

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