ggKbase home page

scnpilot_p_inoc_scaffold_6470_curated

Search features with annotation key words

Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_6470_curated_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..570
DNA (570bp) protein (190aa)
phospho-2-dehydro-3-deoxyheptonate aldolase (EC:2.5.1.54); K01626 3-deoxy-7-phosphoheptulonate synthase [EC:2.5.1.54]
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W1Y3_ACISJ
scnpilot_p_inoc_scaffold_6470_curated_2
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

653..3223
DNA (2571bp) protein (857aa)
diguanylate cyclase n=1 Tax=Acidovorax radicis RepID=UPI0002377897
PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_6470_curated_3
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3652..4182)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7F4_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59587.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_6470_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4345..5331
DNA (987bp) protein (329aa)
rdgC; recombination associated protein id=12552891 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
rdgC; recombination associated protein; K03554 recombination associated protein RdgC
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_6470_curated_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5344..6597
DNA (1254bp) protein (418aa)
Nucleoside recognition domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W1Z3_ACISJ
nucleoside recognition domain-containing protein
Nucleoside recognition domain protein {ECO:0000313|EMBL:ABM40268.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_6470_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7055..7306
DNA (252bp) protein (84aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036371D3
Uncharacterized protein {ECO:0000313|EMBL:GAD21244.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_6470_curated_7
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7419..8585)
DNA (1167bp) protein (389aa)
Acyl-CoA dehydrogenase domain protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T985_ACIDE
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:KJA10964.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
acyl-CoA dehydrogenase
scnpilot_p_inoc_scaffold_6470_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8646..9836)
DNA (1191bp) protein (397aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Acetyl-CoA acetyltransferase {ECO:0000313|EMBL:ADV01621.1}; EC=2.3.1.9 {ECO:0000313|EMBL:ADV01621.1};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Acetyl-CoA acetyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TTN5_ALIDB
scnpilot_p_inoc_scaffold_6470_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9850..10632)
DNA (783bp) protein (261aa)
enoyl-CoA hydratase; K15866 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase [EC:5.3.3.18]
enoyl-CoA hydratase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003783347
Enoyl-CoA hydratase/carnithine racemase {ECO:0000313|EMBL:GAD21248.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_6470_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10694..12493)
DNA (1800bp) protein (600aa)
Long-chain-fatty-acid--CoA ligase {ECO:0000313|EMBL:AEB86576.1}; EC=6.2.1.3 {ECO:0000313|EMBL:AEB86576.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Long-chain-fatty-acid--CoA ligase (EC:6.2.1.3); K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
Long-chain-fatty-acid--CoA ligase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6W4_ALIDK
scnpilot_p_inoc_scaffold_6470_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12490..13311)
DNA (822bp) protein (274aa)
ABC transporter related protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TTN7_ALIDB
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter {ECO:0000313|EMBL:GAO25191.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_6470_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13325..13816)
DNA (492bp) protein (164aa)
Extracellular ligand-binding receptor n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TTN8_ALIDB
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:ADV01624.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Displaying 12 items

View Taxonomy