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scnpilot_p_inoc_scaffold_4604_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_4604_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..565)
DNA (564bp) protein (188aa)
hypothetical protein; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
glycerol-3-phosphate acyltransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003662743
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_4604_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(695..1885)
DNA (1191bp) protein (397aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036B9AC1
FOG: GGDEF domain {ECO:0000313|EMBL:GAD20823.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
diguanylate cyclase
scnpilot_p_inoc_scaffold_4604_curated_3
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1906..2418)
DNA (513bp) protein (171aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W9H0_ACISJ
ybaK/ebsC protein
scnpilot_p_inoc_scaffold_4604_curated_4
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2481..3032
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ATX7_DELSC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX37420.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_p_inoc_scaffold_4604_curated_5
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3037..3252
DNA (216bp) protein (72aa)
Transcriptional regulator, XRE family n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BM76_DELAS
XRE family transcriptional regulator; K07727 putative transcriptional regulator
Helix-turn-helix family protein {ECO:0000313|EMBL:KFJ12010.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
scnpilot_p_inoc_scaffold_4604_curated_6
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3717..3887
DNA (171bp) protein (57aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BM77_DELAS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABX37422.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
scnpilot_p_inoc_scaffold_4604_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3909..4970)
DNA (1062bp) protein (354aa)
NADP-dependent oxidoreductase n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F2D00
Predicted oxidoreductase {ECO:0000313|EMBL:GAD24712.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
aldo/keto reductase
scnpilot_p_inoc_scaffold_4604_curated_8
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5055..5984
DNA (930bp) protein (310aa)
Alpha/beta hydrolase fold protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MBK5_ACIET
serine hydrolase-like protein-like
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACM33684.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_4604_curated_9
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6407..6838)
DNA (432bp) protein (144aa)
MerR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2G2_9BURK
phenylalanyl-tRNA synthetase beta chain-like
MerR family transcriptional regulator {ECO:0000313|EMBL:AFU46535.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_4604_curated_10
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6928..7248)
DNA (321bp) protein (107aa)
Integration host factor subunit alpha n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVD3_9BURK
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
histone family protein DNA-binding protein; K04764 integration host factor subunit alpha
scnpilot_p_inoc_scaffold_4604_curated_11
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7280..9727)
DNA (2448bp) protein (816aa)
pheT; phenylalanyl-tRNA ligase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0N1_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_4604_curated_12
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(9873..10928)
DNA (1056bp) protein (352aa)
Phenylalanine--tRNA ligase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00016813}; EC=6.1.1.20 {ECO:0000256|HAMAP-Rule:MF_00281, ECO:0000256|SAAS:SAAS00089474};; Phenylalanyl-tRNA synthetase alpha subunit {ECO:0000256|HAMAP-Rule:MF_00281}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Phenylalanine--tRNA ligase alpha subunit n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T3R3_ACIDE
phenylalanyl-tRNA synthetase alpha chain-like
scnpilot_p_inoc_scaffold_4604_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11047..11406)
DNA (360bp) protein (120aa)
50S ribosomal protein L20 n=6 Tax=Comamonadaceae RepID=RL20_ACISJ
50S ribosomal protein L20-like
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_4604_curated_14
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(11433..11636)
DNA (204bp) protein (68aa)
50S ribosomal protein L35 n=1 Tax=Curvibacter lanceolatus RepID=UPI00037F26C6
rpmI; 50S ribosomal protein L35; K02916 large subunit ribosomal protein L35
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_4604_curated_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11758..12366)
DNA (609bp) protein (203aa)
Translation initiation factor IF-3 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8I5_ACISJ
threonyl-tRNA synthetase-like
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_4604_curated_16
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12456..14375)
DNA (1920bp) protein (640aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
Threonine--tRNA ligase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0N5_9BURK
threonyl-tRNA synthetase-like
scnpilot_p_inoc_scaffold_4604_curated_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14654..15985)
DNA (1332bp) protein (444aa)
isocitrate lyase; K01637 isocitrate lyase [EC:4.1.3.1]
isocitrate lyase id=12552963 bin=BDI species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=unknown tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_4604_curated_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16301..17242
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2G9_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFU46545.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_4604_curated_19
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17237..17746)
DNA (510bp) protein (170aa)
4-hydroxy-4-methyl-2-oxoglutarate aldolase {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993}; Short=HMG aldolase {ECO:0000256|RuleBase:RU004338};; EC=4.1.1.3 {ECO:0000256|RuleBase:RU004338};; EC=4.1.3.17 {ECO:0000256|RuleBase:RU004338, ECO:0000256|SAAS:SAAS00063993};; Oxaloacetate decarboxylase {ECO:0000256|RuleBase:RU004338}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Ribonuclease activity regulator protein RraA n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVC3_9BURK
ribonuclease activity regulator protein rraa; K02553 regulator of ribonuclease activity A
scnpilot_p_inoc_scaffold_4604_curated_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17987..18292
DNA (306bp) protein (102aa)
swib/mdm2 domain-containing protein id=12553286 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
SWIB/MDM2 domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_4604_curated_21
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18507..18779
DNA (273bp) protein (91aa)
Bfd domain-containing protein (2fe-2S)-binding domain-containing protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0IBA3_9BURK
bfd domain-containing protein (2fe-2S)-binding domain-containing protein
Bfd domain-containing protein (2fe-2S)-binding domain-containing protein {ECO:0000313|EMBL:AFU46551.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_4604_curated_22
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18878..19564
DNA (687bp) protein (229aa)
Outer membrane transport energization protein TonB n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TSD3_ACIAC
TonB family protein; K03832 periplasmic protein TonB
Outer membrane transport energization protein TonB {ECO:0000313|EMBL:ABM33871.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_4604_curated_23
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19580..20299
DNA (720bp) protein (240aa)
MotA/TolQ/ExbB proton channel n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9I0_ACIDE
MotA/TolQ/ExbB proton channel {ECO:0000313|EMBL:EER58874.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
MotA/TolQ/ExbB proton channel
scnpilot_p_inoc_scaffold_4604_curated_24
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20303..20710
DNA (408bp) protein (136aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVB5_9BURK
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:EHL23702.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
biopolymer transport protein ExbD/TolR
scnpilot_p_inoc_scaffold_4604_curated_25
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20852..21070
DNA (219bp) protein (73aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BVB2_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL23699.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_4604_curated_26
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21348..22919
DNA (1572bp) protein (524aa)
Uncharacterized protein n=1 Tax=Achromobacter piechaudii HLE RepID=J4J731_9BURK
UPF0053 inner membrane protein yoaE-like
Uncharacterized protein {ECO:0000313|EMBL:EJO29969.1}; TaxID=1156919 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii HLE.;"
Displaying 26 items

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