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scnpilot_p_inoc_scaffold_2270_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2270_curated_1
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..349
DNA (348bp) protein (116aa)
ABC transporter permease n=1 Tax=Comamonas sp. B-9 RepID=UPI00039588E2
ABC transporter substrate-binding protein; K01999 branched-chain amino acid transport system substrate-binding protein
Extracellular ligand-binding receptor {ECO:0000313|EMBL:GAO27243.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_2270_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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401..1285
DNA (885bp) protein (295aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8TRK8_ALIDB
ABC transporter permease; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADU99109.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2270_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1302..2288
DNA (987bp) protein (329aa)
ABC transporter permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000372F5D1
Inner-membrane translocator {ECO:0000313|EMBL:GAD20820.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_2270_curated_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2439..3443)
DNA (1005bp) protein (335aa)
tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783}; EC=2.5.1.75 {ECO:0000256|HAMAP-Rule:MF_00185, ECO:0000256|RuleBase:RU003783};; Dimethylallyl diphosphate:tRNA dimethylallyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; Isopentenyl-diphosphate:tRNA isopentenyltransferase {ECO:0000256|HAMAP-Rule:MF_00185}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
tRNA dimethylallyltransferase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C224_9BURK
tRNA delta(2)-isopentenylpyrophosphate transferase
scnpilot_p_inoc_scaffold_2270_curated_5
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3556..4899)
DNA (1344bp) protein (448aa)
glutamate dehydrogenase (EC:1.4.1.4); K00262 glutamate dehydrogenase (NADP+) [EC:1.4.1.4]
Glutamate dehydrogenase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHY9_ACIET
Glutamate dehydrogenase {ECO:0000256|PIRNR:PIRNR000185}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_6
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5289..6356
DNA (1068bp) protein (356aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ0_ACIET
RND family efflux transporter MFP subunit
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACM32922.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_7
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6356..9460
DNA (3105bp) protein (1035aa)
Heavy metal efflux pump, CzcA family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ1_ACIET
Heavy metal efflux pump, CzcA family {ECO:0000313|EMBL:ACM32923.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
CzcA family heavy metal efflux pump; K07239 heavy-metal exporter, HME family
scnpilot_p_inoc_scaffold_2270_curated_8
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9457..9795
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ2_ACIET
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM32924.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_9
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9792..11099
DNA (1308bp) protein (436aa)
Outer membrane efflux protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ3_ACIET
outer membrane efflux protein
Outer membrane efflux protein {ECO:0000313|EMBL:ACM32925.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11163..12575)
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00155656}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00155656};; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Histidine kinase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ4_ACIET
histidine kinase
scnpilot_p_inoc_scaffold_2270_curated_11
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12572..13243)
DNA (672bp) protein (224aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ5_ACIET
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ACM32927.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13250..15157)
DNA (1908bp) protein (636aa)
DNA mismatch repair protein MutL n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ6_ACIET
DNA mismatch repair protein Mutl; K03572 DNA mismatch repair protein MutL
DNA mismatch repair protein MutL {ECO:0000256|HAMAP-Rule:MF_00149, ECO:0000256|SAAS:SAAS00058680}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15184..15861
DNA (678bp) protein (226aa)
SNARE associated Golgi protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ7_ACIET
hypothetical protein; K03975 membrane-associated protein
SNARE associated Golgi protein {ECO:0000313|EMBL:ACM32929.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_14
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15929..16153)
DNA (225bp) protein (75aa)
17 kDa surface antigen n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MHZ8_ACIET
17 kda surface antigen; K04062 osmotically inducible lipoprotein OsmB
17 kDa surface antigen {ECO:0000313|EMBL:ACM32930.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_2270_curated_15
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16239..17057)
DNA (819bp) protein (273aa)
MscS Mechanosensitive ion channel n=2 Tax=Alicycliphilus denitrificans RepID=E8TRD5_ALIDB
MscS Mechanosensitive ion channel; K03442 small conductance mechanosensitive channel
MscS Mechanosensitive ion channel {ECO:0000313|EMBL:ADU97846.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_2270_curated_16
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17164..18558)
DNA (1395bp) protein (465aa)
Cell wall hydrolase/autolysin n=2 Tax=Alicycliphilus denitrificans RepID=E8U234_ALIDB
uncharacterized LOC100492482
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:KJA09323.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
scnpilot_p_inoc_scaffold_2270_curated_17
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18555..19070)
DNA (516bp) protein (172aa)
ATPase {ECO:0000313|EMBL:KJA09324.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein id=12550971 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein; K06925 UPF0079 ATP-binding protein
scnpilot_p_inoc_scaffold_2270_curated_18
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19164..20126
DNA (963bp) protein (321aa)
Epoxyqueuosine reductase {ECO:0000256|HAMAP-Rule:MF_00916}; EC=1.17.99.6 {ECO:0000256|HAMAP-Rule:MF_00916};; Queuosine biosynthesis protein QueG {ECO:0000256|HAMAP-Rule:MF_00916}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Epoxyqueuosine reductase n=2 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=QUEG_ALIDK rbh
putative electron transport protein yjeS-like
scnpilot_p_inoc_scaffold_2270_curated_19
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20243..20518)
DNA (276bp) protein (92aa)
XRE family transcriptional regulator n=1 Tax=Comamonas sp. B-9 RepID=UPI0003954E12
Uncharacterized protein {ECO:0000313|EMBL:KGH03253.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
helix-turn-helix domain-containing protein
scnpilot_p_inoc_scaffold_2270_curated_20
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20810..23845
DNA (3036bp) protein (1012aa)
Diguanylate cyclase with PAS/PAC sensor n=1 Tax=Delftia acidovorans (strain DSM 14801 / SPH-1) RepID=A9BN58_DELAS
Diguanylate cyclase with PAS/PAC sensor {ECO:0000313|EMBL:ABX37753.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
PAS/PAC sensor-containing diguanylate cyclase
scnpilot_p_inoc_scaffold_2270_curated_21
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23909..24424)
DNA (516bp) protein (172aa)
Auxin Efflux Carrier n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8U7_ACIDE
Auxin Efflux Carrier {ECO:0000313|EMBL:EER59093.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
auxin efflux carrier
Displaying 21 items

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