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scnpilot_p_inoc_scaffold_990_curated

Search features with annotation key words

Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_990_curated_1
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1..498)
DNA (498bp) protein (166aa)
Twitching motility protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q6A0_ACIAP
twitching motility protein; K02670 twitching motility protein PilU
Twitching motility protein {ECO:0000313|EMBL:ABM31239.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_990_curated_2
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(532..1167)
DNA (636bp) protein (212aa)
Cyclic nucleotide-binding protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8P2_ACIDE
Cyclic nucleotide-binding protein {ECO:0000313|EMBL:EER59151.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Crp/Fnr family transcriptional regulator
scnpilot_p_inoc_scaffold_990_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(1217..2260)
DNA (1044bp) protein (348aa)
Twitching motility protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWC6_ALIDB
twitching motility protein; K02669 twitching motility protein PilT
Twitching motility protein {ECO:0000313|EMBL:ADU98264.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_990_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2297..3016
DNA (720bp) protein (240aa)
Alanine racemase domain protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWC7_ALIDB
alanine racemase; K06997
Alanine racemase domain protein {ECO:0000313|EMBL:ADU98265.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_990_curated_5
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3027..4406)
DNA (1380bp) protein (460aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035FC6BC
Uncharacterized protein {ECO:0000313|EMBL:GAD22986.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
multidrug efflux outer membrane lipoprotein
scnpilot_p_inoc_scaffold_990_curated_6
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(4485..6491)
DNA (2007bp) protein (669aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
macB; macrolide ABC transporter permease/ATP-binding protein MacB; K05685 macrolide transport system ATP-binding/permease protein [EC:3.6.3.-]
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000364777E
scnpilot_p_inoc_scaffold_990_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6502..7713)
DNA (1212bp) protein (404aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000379B8FD
Membrane-fusion protein {ECO:0000313|EMBL:GAD22988.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
macrolide-specific efflux protein MacA; K13888 macrolide-specific efflux protein MacA
scnpilot_p_inoc_scaffold_990_curated_8
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7816..8496)
DNA (681bp) protein (227aa)
Transcriptional regulator, TetR family n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21RK7_RHOFD
TetR family transcriptional regulator
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ABD71596.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
scnpilot_p_inoc_scaffold_990_curated_9
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8604..10247
DNA (1644bp) protein (548aa)
AMP-dependent synthetase n=1 Tax=Acidovorax radicis RepID=UPI0002377BF6
AMP-dependent synthetase and ligase
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_990_curated_10
Delftia sp. Cs1-4, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10304..13594
DNA (3291bp) protein (1097aa)
Pyruvate carboxylase., Methylmalonyl-CoA carboxytransferase {ECO:0000313|EMBL:AEF92418.1}; EC=2.1.3.1 {ECO:0000313|EMBL:AEF92418.1};; EC=6.4.1.1 {ECO:0000313|EMBL:AEF92418.1};; TaxID=742013 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia sp. (strain Cs1-4).;"
pyruvate carboxylase (EC:2.1.3.1 6.4.1.1)
Pyruvate carboxylase., Methylmalonyl-CoA carboxytransferase n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6B165_DELSC
scnpilot_p_inoc_scaffold_990_curated_11
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14436..15308
DNA (873bp) protein (291aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035FF2A5
uncharacterized LOC100487711
Uncharacterized iron-regulated protein {ECO:0000313|EMBL:GAD22998.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_990_curated_12
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15268..17946)
DNA (2679bp) protein (893aa)
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G3P9_ALIDK
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) {ECO:0000313|EMBL:AEB82877.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
scnpilot_p_inoc_scaffold_990_curated_13
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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18099..18947
DNA (849bp) protein (283aa)
Formyltetrahydrofolate deformylase {ECO:0000256|HAMAP-Rule:MF_01927}; EC=3.5.1.10 {ECO:0000256|HAMAP-Rule:MF_01927};; Formyl-FH(4) hydrolase {ECO:0000256|HAMAP-Rule:MF_01927}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Formyltetrahydrofolate deformylase n=2 Tax=Alicycliphilus denitrificans RepID=E8TWD3_ALIDB
formyltetrahydrofolate deformylase-like
scnpilot_p_inoc_scaffold_990_curated_14
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19077..19853)
DNA (777bp) protein (259aa)
ABC transporter permease, partial n=1 Tax=Comamonas sp. B-9 RepID=UPI0003958D83
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:EGK72751.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
ABC transporter permease; K02050 NitT/TauT family transport system permease protein
scnpilot_p_inoc_scaffold_990_curated_15
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(19853..21097)
DNA (1245bp) protein (415aa)
ABC transporter substrate-binding protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003775E5E
Sulfonate ABC transporter periplasmic sulfonate-binding protein {ECO:0000313|EMBL:ENO86084.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
sulfonate ABC transporter periplasmic sulfonate-binding protein; K02051 NitT/TauT family transport system substrate-binding protein
scnpilot_p_inoc_scaffold_990_curated_16
Methyloversatilis universalis, Methyloversatilis, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21122..21934)
DNA (813bp) protein (271aa)
taurine-transporting AtPase (EC:3.6.3.36); K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter ATP-binding protein n=1 Tax=Methyloversatilis universalis RepID=UPI00037D33C6
Aliphatic sulfonates import ATP-binding protein ssuB 2 {ECO:0000313|EMBL:EGK72749.1}; TaxID=1000565 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Methyloversatilis.;" source="Methyloversatilis universalis (strain ATCC BAA-1314 / JCM 13912 /; FAM5).;"
scnpilot_p_inoc_scaffold_990_curated_17
Thauera aminoaromatica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21931..23031)
DNA (1101bp) protein (367aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00035F8BEA
Uncharacterized protein {ECO:0000313|EMBL:ENO87172.1}; TaxID=1234381 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera aminoaromatica S2.;"
hypothetical protein
scnpilot_p_inoc_scaffold_990_curated_18
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(23028..23588)
DNA (561bp) protein (187aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
Alkylhydroperoxidase AhpD family core domain-containing protein n=1 Tax=Massilia timonae CCUG 45783 RepID=K9DB79_9BURK
alkylhydroperoxidase
scnpilot_p_inoc_scaffold_990_curated_19
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23707..24651)
DNA (945bp) protein (315aa)
DNA-binding domain-containing protein, AraC-type n=1 Tax=Acidovorax sp. CF316 RepID=J1EEY5_9BURK
DNA-binding domain-containing protein, AraC-type {ECO:0000313|EMBL:EJE50906.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
AraC family transcriptional regulator
scnpilot_p_inoc_scaffold_990_curated_20
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24774..25667
DNA (894bp) protein (298aa)
LysR substrate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWD2_ALIDB
LysR family transcriptional regulator
LysR substrate-binding protein {ECO:0000313|EMBL:ADU98270.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_990_curated_21
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25730..27217
DNA (1488bp) protein (496aa)
FAD-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003770E31
glycolate oxidase subunit glcD-like
FAD/FMN-containing dehydrogenases {ECO:0000313|EMBL:GAD22994.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_990_curated_22
unknown

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comp(27278..27493)
DNA (216bp) protein (72aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_990_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27704..28081
DNA (378bp) protein (126aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWC9_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:GAO21434.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_990_curated_24
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28149..29288)
DNA (1140bp) protein (380aa)
UPI00039F4C4A related cluster n=1 Tax=unknown RepID=UPI00039F4C4A
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase {ECO:0000313|EMBL:GAD22989.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
class V aminotransferase
scnpilot_p_inoc_scaffold_990_curated_25
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29398..32046
DNA (2649bp) protein (883aa)
ATP-dependent transcription regulator LuxR n=1 Tax=Comamonas testosteroni S44 RepID=D8DAF6_COMTE
Uncharacterized protein {ECO:0000313|EMBL:KGH21587.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
ATP-dependent transcription regulator LuxR; K03556 LuxR family transcriptional regulator, maltose regulon positive regulatory protein
scnpilot_p_inoc_scaffold_990_curated_26
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32185..33480
DNA (1296bp) protein (432aa)
Indolepyruvate ferredoxin oxidoreductase {ECO:0000313|EMBL:EHP40628.1}; EC=1.2.7.8 {ECO:0000313|EMBL:EHP40628.1};; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
indolepyruvate ferredoxin oxidoreductase; K04090 indolepyruvate ferredoxin oxidoreductase [EC:1.2.7.8]
Indolepyruvate ferredoxin oxidoreductase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SA79_9BURK
Displaying 26 items

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