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scnpilot_p_inoc_scaffold_956_curated

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_956_curated_1
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(204..1088)
DNA (885bp) protein (295aa)
LysR family transcriptional regulator n=1 Tax=Comamonas sp. B-9 RepID=UPI000395BF2D
LysR family transcriptional regulator {ECO:0000313|EMBL:KEZ06643.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
MetR family transcriptional regulator; K03576 LysR family transcriptional regulator, regulator for metE and metH
scnpilot_p_inoc_scaffold_956_curated_2
Alcaligenes faecalis, Alcaligenes, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1210..3504
DNA (2295bp) protein (765aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00049969}; EC=2.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00172, ECO:0000256|SAAS:SAAS00050077};; Cobalamin-independent methionine synthase {ECO:0000256|HAMAP-Rule:MF_00172}; Methionine synthase, vitamin-B12 independent isozyme {ECO:0000256|HAMAP-Rule:MF_00172}; TaxID=511 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Alcaligenes.;" source="Alcaligenes
metE1; 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14); K00549 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [EC:2.1.1.14]
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=Alcaligenes RepID=M5J2G5_9BURK
scnpilot_p_inoc_scaffold_956_curated_3
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3889..4323)
DNA (435bp) protein (145aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
HipA-like N-terminal domain protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XJP9_9BURK
HipA-like N-terminal domain protein {ECO:0000313|EMBL:EFF73077.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
scnpilot_p_inoc_scaffold_956_curated_4
Pusillimonas sp. T7-7, Pusillimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4721..5182)
DNA (462bp) protein (154aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
Uncharacterized protein n=1 Tax=Pusillimonas sp. (strain T7-7) RepID=F4GR13_PUSST
Uncharacterized protein {ECO:0000313|EMBL:AEC20713.1}; TaxID=1007105 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Pusillimonas.;" source="Pusillimonas sp. (strain T7-7).;"
scnpilot_p_inoc_scaffold_956_curated_5
Achromobacter piechaudii, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5179..5532)
DNA (354bp) protein (118aa)
DNA-binding helix-turn-helix protein n=1 Tax=Achromobacter piechaudii ATCC 43553 RepID=D4XJP8_9BURK
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFF73076.1}; TaxID=742159 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter piechaudii ATCC 43553.;"
hypothetical protein
scnpilot_p_inoc_scaffold_956_curated_6
Burkholderia sp. lig30, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5777..6757
DNA (981bp) protein (327aa)
hypothetical protein n=1 Tax=Methylosinus sp. LW4 RepID=UPI00035C5378
Uncharacterized protein {ECO:0000313|EMBL:KDB10697.1}; TaxID=1192124 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. lig30.;"
secretion protein HlyD family protein; K01993 HlyD family secretion protein
scnpilot_p_inoc_scaffold_956_curated_7
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6754..9537
DNA (2784bp) protein (928aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00037F31C7
ABC-type transport system ATPase component {ECO:0000313|EMBL:KFL46612.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
ABC transporter related; K13926 ribosome-dependent ATPase
scnpilot_p_inoc_scaffold_956_curated_8
Sphingomonas sanxanigenens, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9539..10666
DNA (1128bp) protein (376aa)
hypothetical protein n=1 Tax=alpha proteobacterium LLX12A RepID=UPI00035CBF7D
Uncharacterized protein {ECO:0000313|EMBL:AHE52297.1}; TaxID=1123269 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sanxanigenens DSM 19645 = NX02.;"
multidrug transporter permease protein; K09686 antibiotic transport system permease protein
scnpilot_p_inoc_scaffold_956_curated_9
Novosphingobium resinovorum, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10810..12105
DNA (1296bp) protein (432aa)
NodT family efflux transporter, outer membrane factor (OMF) lipoprotein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CY33_SPHYA
NodT family efflux transporter, outer membrane factor (OMF) lipoprotein {ECO:0000313|EMBL:EZP81006.1}; Flags: Precursor;; TaxID=158500 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium resinovorum.;"
RND efflux system outer membrane lipoprotein
scnpilot_p_inoc_scaffold_956_curated_10
BJP_IG2103_Dechloromonas_63_51, Dechloromonas, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12140..12766
DNA (627bp) protein (209aa)
hypothetical protein n=1 Tax=Burkholderia sp. JPY347 RepID=UPI0003796075
TetR family transcriptional regulator
Tax=BJP_IG2103_Dechloromonas_63_51
scnpilot_p_inoc_scaffold_956_curated_11
Burkholderia sp. 2002721687, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12796..13482)
DNA (687bp) protein (229aa)
TetR family transcriptional regulator n=1 Tax=Burkholderia thailandensis RepID=UPI00016AF9E7
Bacterial regulatory s, tetR family protein {ECO:0000313|EMBL:AJY43019.1}; TaxID=1468409 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. 2002721687.;"
TetR family transcriptional regulator
scnpilot_p_inoc_scaffold_956_curated_12
Burkholderia phymatum, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13597..14478
DNA (882bp) protein (294aa)
Alpha/beta hydrolase fold protein n=1 Tax=Burkholderia phymatum (strain DSM 17167 / STM815) RepID=B2JLN1_BURP8
alpha/beta hydrolase fold protein
Alpha/beta hydrolase fold protein {ECO:0000313|EMBL:ACC72664.1}; TaxID=391038 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia phymatum (strain DSM 17167 / STM815).;"
scnpilot_p_inoc_scaffold_956_curated_13
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14475..16175
DNA (1701bp) protein (567aa)
monooxygenase n=1 Tax=Variovorax paradoxus RepID=UPI00035F48EE
FAD-binding monooxygenase protein
Monooxygenase {ECO:0000313|EMBL:EYC50086.1}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
scnpilot_p_inoc_scaffold_956_curated_14
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16172..17167
DNA (996bp) protein (332aa)
Biphenyl-2,3-diol 1,2-dioxygenase n=1 Tax=Burkholderia thailandensis MSMB43 RepID=I6A6C6_BURTH
Extradiol ring-cleavage dioxygenase {ECO:0000313|EMBL:KEZ05501.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
glyoxalase/bleomycin resistance protein/dioxygenase
scnpilot_p_inoc_scaffold_956_curated_15
unknown

Not on your lists

17164..17346
DNA (183bp) protein (61aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_956_curated_16
Burkholderia sp. MSh2, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17343..18128
DNA (786bp) protein (262aa)
4-oxalocrotonate decarboxylase (EC:4.1.1.77)
2-keto-4-pentenoate hydratase n=1 Tax=Burkholderia sp. JPY347 RepID=UPI00036B853C
2-keto-4-pentenoate hydratase {ECO:0000313|EMBL:KEZ05499.1}; TaxID=1506588 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MSh2.;"
scnpilot_p_inoc_scaffold_956_curated_17
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18307..19407
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Cupriavidus necator (strain ATCC 43291 / DSM 13513 / N-1) RepID=F8GWK5_CUPNN
Uncharacterized protein {ECO:0000313|EMBL:KDP86240.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein
scnpilot_p_inoc_scaffold_956_curated_18
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19461..20951)
DNA (1491bp) protein (497aa)
Succinic semialdehyde dehydrogenase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6Y5_ACIDE
Succinic semialdehyde dehydrogenase {ECO:0000313|EMBL:EER59766.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
succinate-semialdehyde dehydrogenase
scnpilot_p_inoc_scaffold_956_curated_19
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21038..21850)
DNA (813bp) protein (271aa)
polyamine ABC transporter permease n=1 Tax=Curvibacter lanceolatus RepID=UPI00036DC60D
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_956_curated_20
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21863..23092)
DNA (1230bp) protein (410aa)
polyamine ABC transporter substrate-binding protein n=1 Tax=Acidovorax radicis RepID=UPI0002377ED3
binding-protein-dependent transport system inner membrane protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_956_curated_21
Polaromonas sp. CF318, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23217..24245)
DNA (1029bp) protein (343aa)
spermidine/putrescine ABC transporter substrate-binding protein n=1 Tax=Curvibacter lanceolatus RepID=UPI0003720861
extracellular solute-binding protein; K02055 putative spermidine/putrescine transport system substrate-binding protein
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:EJL90106.1}; Flags: Precursor;; TaxID=1144318 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CF318.;"
scnpilot_p_inoc_scaffold_956_curated_22
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24314..25405)
DNA (1092bp) protein (364aa)
potA2; spermidine/putrescine ABC transporter, ATP-binding protein PotA (EC:3.6.3.31)
spermidine/putrescine ABC transporter ATP-binding protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036EF0C3
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
scnpilot_p_inoc_scaffold_956_curated_23
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25423..26715)
DNA (1293bp) protein (431aa)
4-aminobutyrate aminotransferase n=1 Tax=Acidovorax sp. CF316 RepID=J1E8J1_9BURK
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:EJE48746.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
4-aminobutyrate aminotransferase
scnpilot_p_inoc_scaffold_956_curated_24
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26892..28307
DNA (1416bp) protein (472aa)
GntR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0HYA0_9BURK
GntR family transcriptional regulator
GntR family transcriptional regulator {ECO:0000313|EMBL:AFU45902.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_956_curated_25
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


28372..31002
DNA (2631bp) protein (877aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
alanyl-tRNA synthetase; K01872 alanyl-tRNA synthetase [EC:6.1.1.7]
alanyl-tRNA synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036AB2B6
scnpilot_p_inoc_scaffold_956_curated_26
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31117..32163)
DNA (1047bp) protein (349aa)
Diguanylate cyclase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I445_9BURK
diguanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_956_curated_27
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32160..32951)
DNA (792bp) protein (264aa)
trmB; tRNA (guanine-N(7)-)-methyltransferase (EC:2.1.1.33)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0X1_9BURK
scnpilot_p_inoc_scaffold_956_curated_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32948..33304)
DNA (357bp) protein (119aa)
Glutamyl-Q tRNA(Asp) synthetase {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018238}; Short=Glu-Q-RSs {ECO:0000256|HAMAP-Rule:MF_01428};; EC=6.1.1.- {ECO:0000256|HAMAP-Rule:MF_01428, ECO:0000256|SAAS:SAAS00018222};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
glutamate--tRNA ligase (EC:6.1.1.17); K01894 glutamyl-Q tRNA(Asp) synthetase [EC:6.1.1.-]
glutamyl-tRNA synthetase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000365873A
Displaying 28 items

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