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scnpilot_p_inoc_scaffold_1472_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1472_curated_1
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..748
DNA (747bp) protein (249aa)
thiolase n=1 Tax=Ideonella sp. B508-1 RepID=UPI000348B770
thiolase
Thiolase {ECO:0000313|EMBL:ABD71892.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
scnpilot_p_inoc_scaffold_1472_curated_2
Rhodoferax ferrireducens, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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762..2366
DNA (1605bp) protein (535aa)
AMP-dependent synthetase and ligase n=1 Tax=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) RepID=Q21QR2_RHOFD
AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase {ECO:0000313|EMBL:ABD71891.1}; TaxID=338969 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Rhodoferax.;" source="Rhodoferax ferrireducens (strain ATCC BAA-621 / DSM 15236 / T118); (Albidiferax ferrireducens).;"
scnpilot_p_inoc_scaffold_1472_curated_3
marine gamma proteobacterium HTCC2080, Gammaproteobacteria, Proteobacteria, Bacteria

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2397..3158
DNA (762bp) protein (254aa)
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z508_9GAMM
2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase {ECO:0000313|EMBL:EAW40902.1}; TaxID=247639 species="Bacteria; Proteobacteria; Gammaproteobacteria; OMG group; OM60 clade.;" source="marine gamma proteobacterium HTCC2080.;"
putative oxidoreductase
scnpilot_p_inoc_scaffold_1472_curated_4
Desulfobacterium autotrophicum, Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

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3169..3945
DNA (777bp) protein (259aa)
fabG8; protein FabG8 (EC:1.1.1.100)
FabG8 {ECO:0000313|EMBL:ACN17048.1}; EC=1.1.1.100 {ECO:0000313|EMBL:ACN17048.1};; TaxID=177437 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium.;" source="Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2).;"
FabG8 n=1 Tax=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) RepID=C0QC31_DESAH
scnpilot_p_inoc_scaffold_1472_curated_5
Pseudogulbenkiania ferrooxidans, Pseudogulbenkiania, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

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4023..5423
DNA (1401bp) protein (467aa)
Methyl-accepting chemotaxis protein n=1 Tax=Pseudogulbenkiania ferrooxidans EGD-HP2 RepID=U1ACL6_9NEIS
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:ERE01844.1}; TaxID=1388764 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Pseudogulbenkiania.;" source="Pseudogulbenkiania ferrooxidans EGD-HP2.;"
methyl-accepting chemotaxis protein II
scnpilot_p_inoc_scaffold_1472_curated_6
Ramlibacter tataouinensis, Ramlibacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5420..6520)
DNA (1101bp) protein (367aa)
Uncharacterized protein n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XW68_RAMTT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEG91638.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
scnpilot_p_inoc_scaffold_1472_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6587..7021
DNA (435bp) protein (145aa)
HTH-type transcriptional regulator cueR-like
HTH-type transcriptional regulator cueR-like id=12550644 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1472_curated_8
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7057..7518
DNA (462bp) protein (154aa)
Phenylacetic acid degradation-like protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HXP8_9BURK
phenylacetic acid degradation-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_1472_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7553..8740
DNA (1188bp) protein (396aa)
acyl-CoA dehydrogenase; K00253 isovaleryl-CoA dehydrogenase [EC:1.3.8.4]
UPI0003A69C37 related cluster n=1 Tax=unknown RepID=UPI0003A69C37
Isovaleryl-CoA dehydrogenase {ECO:0000313|EMBL:GAD24533.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1472_curated_10
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8776..9438
DNA (663bp) protein (221aa)
carbonate dehydratase (EC:4.2.1.1); K01673 carbonic anhydrase [EC:4.2.1.1]
Carbonic anhydrase {ECO:0000256|RuleBase:RU003956}; EC=4.2.1.1 {ECO:0000256|RuleBase:RU003956};; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
Carbonic anhydrase n=2 Tax=Alicycliphilus denitrificans RepID=E8TST9_ALIDB
scnpilot_p_inoc_scaffold_1472_curated_11
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9471..11285
DNA (1815bp) protein (605aa)
aceK; bifunctional isocitrate dehydrogenase kinase/phosphatase (EC:3.1.3.-)
Isocitrate dehydrogenase kinase/phosphatase {ECO:0000256|HAMAP-Rule:MF_00747, ECO:0000256|SAAS:SAAS00063056}; Short=IDH kinase/phosphatase {ECO:0000256|HAMAP-Rule:MF_00747};; Short=IDHK/P {ECO:0000256|HAMAP-Rule:MF_00747};; EC=2.7.11.5 {ECO:0000256|HAMAP-Rule:MF_00747, ECO:0000256|SAAS:SAAS00063055};; EC=3.1.3.- {ECO:0000256|HAMAP-Rule:MF_00747, ECO:0000256|SAAS:SAAS00063053};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovor
isocitrate dehydrogenase n=1 Tax=Acidovorax radicis RepID=UPI0002376A8F
scnpilot_p_inoc_scaffold_1472_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11307..12488
DNA (1182bp) protein (394aa)
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9] id=12550639 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
acetyl-CoA acetyltransferase (EC:2.3.1.9); K00626 acetyl-CoA C-acetyltransferase [EC:2.3.1.9]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1472_curated_13
Castellaniella defragrans, Castellaniella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12712..15036
DNA (2325bp) protein (775aa)
Major facilitator superfamily MFS_1 n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIC3_XANP2
Permease of the major facilitator superfamily {ECO:0000313|EMBL:CDM23271.1}; TaxID=1437824 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Castellaniella.;" source="Castellaniella defragrans 65Phen.;"
major facilitator transporter
scnpilot_p_inoc_scaffold_1472_curated_14
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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15357..16400
DNA (1044bp) protein (348aa)
Putative ABC-type uncharacterized transport system periplasmic component n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HSU6_AZOC5
ABC transporter periplasmic protein; K01989 putative ABC transport system substrate-binding protein
Putative ABC-type uncharacterized transport system periplasmic component {ECO:0000313|EMBL:BAF90216.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_p_inoc_scaffold_1472_curated_15
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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16397..17077
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HSU3_AZOC5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:BAF90215.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
scnpilot_p_inoc_scaffold_1472_curated_16
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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17074..18210
DNA (1137bp) protein (379aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201};; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
Alanine racemase n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8HST8_AZOC5
alanine racemase
scnpilot_p_inoc_scaffold_1472_curated_17
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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18207..18962
DNA (756bp) protein (252aa)
Uncharacterized protein n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIC1_XANP2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS67764.1}; Flags: Precursor;; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
scnpilot_p_inoc_scaffold_1472_curated_18
unknown

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18952..19755
DNA (804bp) protein (268aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1472_curated_19
unknown

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20494..21807
DNA (1314bp) protein (438aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1472_curated_20
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21731..22291)
DNA (561bp) protein (187aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WB42_ACISJ
DEAD/DEAH box helicase domain-containing protein
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABM43467.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Displaying 20 items

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