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scnpilot_p_inoc_scaffold_1470_curated

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1470_curated_1
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..711
DNA (711bp) protein (237aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
ribonuclease ph (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56]
Ribonuclease PH n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MEK0_ACIET
scnpilot_p_inoc_scaffold_1470_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


757..1362
DNA (606bp) protein (202aa)
non-canonical purine ntp pyrophosphatase, rdgb/ham1 family; K02428 dITP/XTP pyrophosphatase [EC:3.6.1.19]
Non-canonical purine NTP pyrophosphatase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5TAW8_ACIDE
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1470_curated_3
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1457..2653
DNA (1197bp) protein (399aa)
Oxygen-independent coproporphyrinogen III oxidase n=1 Tax=Acidovorax sp. KKS102 RepID=K0HV96_9BURK
oxygen-independent coproporphyrinogen-III oxidase-like protein HI_0463-like
Oxygen-independent coproporphyrinogen III oxidase {ECO:0000313|EMBL:AFU44712.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_1470_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2663..2977)
DNA (315bp) protein (105aa)
hypothetical protein id=12553866 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1470_curated_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3056..4282)
DNA (1227bp) protein (409aa)
Sporulation domain protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TT38_ACIAC
sporulation domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1470_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4450..4809
DNA (360bp) protein (120aa)
Uncharacterized protein (Fragment) id=12549715 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1470_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4900..7161
DNA (2262bp) protein (754aa)
TonB-dependent receptor id=12549714 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1470_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7195..8073)
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TYA1_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99687.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1470_curated_9
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8233..9012)
DNA (780bp) protein (260aa)
Hydroxypyruvate isomerase {ECO:0000256|PIRNR:PIRNR006241}; EC=5.3.1.22 {ECO:0000256|PIRNR:PIRNR006241};; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
hydroxypyruvate isomerase (EC:5.3.1.22); K01816 hydroxypyruvate isomerase [EC:5.3.1.22]
Hydroxypyruvate isomerase n=2 Tax=Delftia acidovorans RepID=S2X646_DELAC
scnpilot_p_inoc_scaffold_1470_curated_10
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9088..10422)
DNA (1335bp) protein (445aa)
hydroxypyruvate reductase (EC:1.1.1.81); K00050 hydroxypyruvate reductase [EC:1.1.1.81]
Hydroxypyruvate reductase n=1 Tax=Acidovorax sp. NO-1 RepID=H0BY67_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_1470_curated_11
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10526..11191
DNA (666bp) protein (222aa)
GntR family transcriptional regulator n=1 Tax=Curvibacter lanceolatus RepID=UPI00036AF323
GntR family transcriptional regulator
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABM31707.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_1470_curated_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11205..12176
DNA (972bp) protein (324aa)
urate catabolism protein (EC:3.5.1.41)
Urate catabolism protein {ECO:0000313|EMBL:ACM32514.1}; EC=3.5.1.41 {ECO:0000313|EMBL:ACM32514.1};; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Urate catabolism protein n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MFF1_ACIET
scnpilot_p_inoc_scaffold_1470_curated_13
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12242..14017
DNA (1776bp) protein (592aa)
hydantoinase/carbamoylase family amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87]
Amidase, hydantoinase/carbamoylase family {ECO:0000313|EMBL:AEB83743.1}; EC=3.5.1.87 {ECO:0000313|EMBL:AEB83743.1};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
Amidase, hydantoinase/carbamoylase family n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QC42_ACIAP
scnpilot_p_inoc_scaffold_1470_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14014..15267
DNA (1254bp) protein (418aa)
Peptidase dimerization domain protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXR3_ALIDB
peptidase dimerization domain-containing protein
Peptidase dimerization domain protein {ECO:0000313|EMBL:AEB83742.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1470_curated_15
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15329..16534)
DNA (1206bp) protein (402aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI00037718E6
Diguanylate phosphodiesterase {ECO:0000313|EMBL:GAO24411.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
diguanylate phosphodiesterase
scnpilot_p_inoc_scaffold_1470_curated_16
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16512..18302)
DNA (1791bp) protein (597aa)
Methyl-accepting chemotaxis sensory transducer n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MCC7_ACIET
methyl-accepting chemotaxis sensory transducer
Methyl-accepting chemotaxis sensory transducer {ECO:0000313|EMBL:ACM33832.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1470_curated_17
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18518..20005
DNA (1488bp) protein (496aa)
Xanthine permease n=2 Tax=Alicycliphilus denitrificans RepID=E8TXR5_ALIDB
xanthine permease; K03458 nucleobase:cation symporter-2, NCS2 family
Uracil-xanthine permease {ECO:0000313|EMBL:GAO24414.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1470_curated_18
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20329..21603)
DNA (1275bp) protein (425aa)
hypothetical protein; K07154 serine/threonine-protein kinase HipA [EC:2.7.11.1]
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YFD2_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO90225.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
scnpilot_p_inoc_scaffold_1470_curated_19
CG_Rhodof_04, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21616..21948)
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Y7G1_9RHOO
hypothetical protein
Tax=CG_Rhodof_04
scnpilot_p_inoc_scaffold_1470_curated_20
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22222..22638)
DNA (417bp) protein (139aa)
Biopolymer transport protein ExbD/TolR n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6YU21_9RHOO
Biopolymer transport protein ExbD/TolR {ECO:0000313|EMBL:ENO83449.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
biopolymertransporter ExbD/TolR; K03559 biopolymer transport protein ExbD
scnpilot_p_inoc_scaffold_1470_curated_21
R_Rhodocyclales_63_24, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22638..23387)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Methylobacter marinus RepID=UPI00036FC6B4
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
Tax=RIFCSPLOWO2_02_FULL_Rhodocyclales_63_24_curated
scnpilot_p_inoc_scaffold_1470_curated_22
Azoarcus sp. BH72, Azoarcus, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23390..24154)
DNA (765bp) protein (255aa)
Putative TonB protein n=1 Tax=Azoarcus sp. (strain BH72) RepID=A1K327_AZOSB
tonB1; putative TonB protein; K03832 periplasmic protein TonB
Putative TonB protein {ECO:0000313|EMBL:CAL93232.1}; TaxID=62928 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Azoarcus.;" source="Azoarcus sp. (strain BH72).;"
scnpilot_p_inoc_scaffold_1470_curated_23
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24167..24928)
DNA (762bp) protein (254aa)
ABC transporter-like protein; K02013 iron complex transport system ATP-binding protein [EC:3.6.3.34]
hypothetical protein n=1 Tax=Methyloferula stellata RepID=UPI000377B5E9
ABC transporter related {ECO:0000313|EMBL:ACK52357.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_p_inoc_scaffold_1470_curated_24
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24954..26048)
DNA (1095bp) protein (365aa)
ABC transporter permease n=1 Tax=Methylocystis parvus RepID=UPI0003667394
transport system permease; K02015 iron complex transport system permease protein
Transport system permease protein {ECO:0000313|EMBL:ACK52358.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_p_inoc_scaffold_1470_curated_25
Aromatoleum aromaticum, Aromatoleum, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26128..26328
DNA (201bp) protein (67aa)
Uncharacterized protein n=1 Tax=Aromatoleum aromaticum (strain EbN1) RepID=Q5P628_AROAE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI07233.1}; TaxID=76114 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Aromatoleum.;" source="Aromatoleum aromaticum (strain EbN1) (Azoarcus sp. (strain EbN1)).;"
scnpilot_p_inoc_scaffold_1470_curated_26
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26416..27600)
DNA (1185bp) protein (395aa)
Possible periplasmic iron siderophore binding protein of ABC transporter n=1 Tax=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) RepID=Q6N7E9_RHOPA
ABC transporter periplasmic iron siderophore binding protein; K02016 iron complex transport system substrate-binding protein
Possible periplasmic iron siderophore binding protein of ABC transporter {ECO:0000313|EMBL:CAE27749.1}; TaxID=258594 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009).;"
scnpilot_p_inoc_scaffold_1470_curated_27
Nocardia cyriacigeorgica, Nocardia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27600..28670)
DNA (1071bp) protein (357aa)
Putative ATPase n=1 Tax=Nocardia cyriacigeorgica (strain GUH-2) RepID=H6R2N8_NOCCG
putative ATPase
Putative ATPase {ECO:0000313|EMBL:CCF61888.1}; TaxID=1127134 species="Bacteria; Actinobacteria; Corynebacteriales; Nocardiaceae; Nocardia.;" source="Nocardia cyriacigeorgica (strain GUH-2).;"
scnpilot_p_inoc_scaffold_1470_curated_28
Pseudomonas amygdali, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28725..31109)
DNA (2385bp) protein (795aa)
TonB-dependent siderophore receptor n=1 Tax=Pseudomonas syringae pv. lachrymans str. M301315 RepID=F3E9Y8_PSESL
TonB-dependent siderophore receptor {ECO:0000313|EMBL:EGH82971.1}; TaxID=629260 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas amygdali.;" source="Pseudomonas amygdali pv. lachrymans str. M301315.;"
TonB-dependent siderophore receptor
scnpilot_p_inoc_scaffold_1470_curated_29
Methylocella silvestris, Methylocella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31572..32633)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) RepID=B8ETK9_METSB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACK52361.1}; TaxID=395965 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Beijerinckiaceae; Methylocella.;" source="Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906).;"
scnpilot_p_inoc_scaffold_1470_curated_30
unknown

Not on your lists

comp(32659..33669)
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Methylocystis parvus RepID=UPI0003741DC8
Displaying items 1-30 of 38 in total

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