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scnpilot_p_inoc_scaffold_2035_curated

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Displaying 12 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2035_curated_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1..4008
DNA (4008bp) protein (1336aa)
glutamate synthase (NADH) large subunit (EC:1.4.1.14); K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14]
Glutamate synthase (NADH) large subunit {ECO:0000313|EMBL:ABM40985.1}; EC=1.4.1.14 {ECO:0000313|EMBL:ABM40985.1};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Glutamate synthase (NADH) large subunit n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W410_ACISJ
scnpilot_p_inoc_scaffold_2035_curated_2
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4045..5523
DNA (1479bp) protein (493aa)
gltD; glutamate synthase subunit beta; K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
dihydropyrimidine dehydrogenase subunit A n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003631642
NADPH-dependent glutamate synthase beta chain {ECO:0000313|EMBL:GAD23113.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_2035_curated_3
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

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5614..6159
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Thiorhodovibrio sp. 970 RepID=H8Z3V0_9GAMM
hypothetical protein
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
scnpilot_p_inoc_scaffold_2035_curated_4
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6250..7596)
DNA (1347bp) protein (449aa)
HipA domain protein n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6ALT8_DELSC
HipA domain-containing protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_2035_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7729..8796
DNA (1068bp) protein (356aa)
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HYS4_PARL1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABS65057.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
scnpilot_p_inoc_scaffold_2035_curated_6
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8882..9160
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VRX1_POLNA
hypothetical protein; K09803 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM38399.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_p_inoc_scaffold_2035_curated_7
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9135..9413
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VRX0_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM38398.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_p_inoc_scaffold_2035_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9594..11096)
DNA (1503bp) protein (501aa)
methylmalonate-semialdehyde dehydrogenase (EC:1.2.1.27); K00140 malonate-semialdehyde dehydrogenase (acetylating) / methylmalonate-semialdehyde dehydrogenase [EC:1.2.1.18 1.2.1.27]
methylmalonate-semialdehyde dehydrogenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036FEC98
Methylmalonate-semialdehyde dehydrogenase {ECO:0000313|EMBL:GAD23108.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_2035_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11114..12325)
DNA (1212bp) protein (404aa)
ABC transporter permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003689611
ABC-type branched-chain amino acid transport systems, periplasmic component {ECO:0000313|EMBL:GAD23109.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
branched-chain amino acid abc transporter periplasmic protein; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_2035_curated_10
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12461..13384
DNA (924bp) protein (308aa)
LysR family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036445AA
Transcriptional regulator {ECO:0000313|EMBL:GAD23110.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
LysR family transcriptional regulator
scnpilot_p_inoc_scaffold_2035_curated_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13495..14295
DNA (801bp) protein (267aa)
Amino acid ABC transporter substrate-binding protein, PAAT family n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W412_ACISJ
extracellular solute-binding protein; K02030 polar amino acid transport system substrate-binding protein
Amino acid ABC transporter substrate-binding protein, PAAT family {ECO:0000313|EMBL:ABM40987.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_2035_curated_12
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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14473..14766
DNA (294bp) protein (98aa)
Polar amino acid ABC transporter, inner membrane subunit n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDF9_ACIET
uncharacterized LOC100490970
Polar amino acid ABC transporter, inner membrane subunit {ECO:0000313|EMBL:ACM32191.1}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
Displaying 12 items

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