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scnpilot_p_inoc_scaffold_1767_curated

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Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1767_curated_1
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3..1430)
DNA (1428bp) protein (476aa)
TonB-dependent receptor n=1 Tax=Delftia sp. (strain Cs1-4) RepID=F6APS5_DELSC
TonB dependent receptor family protein {ECO:0000313|EMBL:KFJ10933.1}; TaxID=80866 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (Pseudomonas acidovorans) (Comamonas acidovorans).;"
TonB-dependent receptor; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_1767_curated_2
Ralstonia sp. PBA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2560..2757)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. PBA RepID=I9W8A0_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EIZ04777.1}; TaxID=795666 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. PBA.;"
transmembrane protein
scnpilot_p_inoc_scaffold_1767_curated_3
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(3094..3405)
DNA (312bp) protein (104aa)
transcriptional regulator n=1 Tax=Cupriavidus sp. WS RepID=UPI00035C4372
ygaV; DNA-binding transcriptional regulator
Putative transcriptional activator {ECO:0000313|EMBL:AAN62123.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
scnpilot_p_inoc_scaffold_1767_curated_4
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3492..4361
DNA (870bp) protein (290aa)
beta-lactamase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037B6D49
Metallo-beta-lactamase {ECO:0000313|EMBL:GAD20439.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
Beta-lactamase-like
scnpilot_p_inoc_scaffold_1767_curated_5
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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4666..5043
DNA (378bp) protein (126aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
alkylhydroperoxidase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036A23D0
alkylhydroperoxidase AhpD core
scnpilot_p_inoc_scaffold_1767_curated_6
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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5126..5497
DNA (372bp) protein (124aa)
sulfur reduction protein DsrE n=1 Tax=Cupriavidus sp. WS RepID=UPI00036DF932
hypothetical protein
Putative uncharacterized protein ORF C33 {ECO:0000313|EMBL:AAN62126.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
scnpilot_p_inoc_scaffold_1767_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5853..7223)
DNA (1371bp) protein (457aa)
tryptophanase (EC:4.1.99.1); K01667 tryptophanase [EC:4.1.99.1] id=12552123 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
tryptophanase (EC:4.1.99.1); K01667 tryptophanase [EC:4.1.99.1]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1767_curated_8
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7483..8454
DNA (972bp) protein (324aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S6_ALIDB
hypothetical protein; K01989 putative ABC transport system substrate-binding protein
Uncharacterized protein {ECO:0000313|EMBL:ADV00065.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1767_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8551..9438
DNA (888bp) protein (296aa)
Inner-membrane translocator n=2 Tax=Alicycliphilus denitrificans RepID=E8U1S7_ALIDB
ABC transporter permease; K05832 putative ABC transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADV00066.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1767_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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9458..10252
DNA (795bp) protein (265aa)
ABC transporter related protein n=2 Tax=Acidovorax RepID=A1W7A2_ACISJ
ABC transporter; K05833 putative ABC transport system ATP-binding protein
ATP-binding protein {ECO:0000313|EMBL:GAO23233.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1767_curated_11
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10382..11854
DNA (1473bp) protein (491aa)
Lysine-specific permease n=1 Tax=Delftia acidovorans CCUG 15835 RepID=S2X0Z8_DELAC
Lysine-specific permease {ECO:0000313|EMBL:EPD45421.1}; TaxID=883100 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 15835.;"
amino acid permease-associated protein; K11733 lysine-specific permease
scnpilot_p_inoc_scaffold_1767_curated_12
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11976..12314)
DNA (339bp) protein (113aa)
UPI0003D3B486 related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3B486
Regulator of competence-specific genes {ECO:0000313|EMBL:GAD23330.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K07343 DNA transformation protein and related proteins
scnpilot_p_inoc_scaffold_1767_curated_13
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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12584..12817
DNA (234bp) protein (78aa)
hypothetical protein n=1 Tax=Curvibacter lanceolatus RepID=UPI00036B3FED
Virulence-associated protein and related protein {ECO:0000313|EMBL:BAO80802.1}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1767_curated_14
Comamonadaceae bacterium A1, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12817..13227
DNA (411bp) protein (137aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1458425 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Comamonadaceae bacterium A1.;"
pirin n=1 Tax=Curvibacter lanceolatus RepID=UPI000371AB63
nucleic acid binding protein; K07062
scnpilot_p_inoc_scaffold_1767_curated_15
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13246..13701)
DNA (456bp) protein (152aa)
Transcriptional regulator, AsnC family n=3 Tax=Comamonas testosteroni RepID=B7X5J6_COMTE
AsnC family transcriptional regulator {ECO:0000313|EMBL:KGH30511.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
scnpilot_p_inoc_scaffold_1767_curated_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13912..15453)
DNA (1542bp) protein (514aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WJW5_DELAC
Uncharacterized protein {ECO:0000313|EMBL:EPD32962.1}; TaxID=883101 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans CCUG 274B.;"
AMP-dependent synthetase/ligase
scnpilot_p_inoc_scaffold_1767_curated_17
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(15512..16837)
DNA (1326bp) protein (442aa)
NAD-binding 3-hydroxyacyl-CoA dehydrogenase; K07516 3-hydroxyacyl-CoA dehydrogenase [EC:1.1.1.35]
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Chryseobacterium taeanense RepID=UPI00036F4DD8
3-hydroxyacyl-CoA dehydrogenase NAD-binding {ECO:0000313|EMBL:ABX34037.1}; TaxID=398578 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia acidovorans (strain DSM 14801 / SPH-1).;"
Displaying 17 items

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