ggKbase home page

scnpilot_p_inoc_scaffold_1237_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1237_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1..753
DNA (753bp) protein (251aa)
twitching motility protein PilT n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000366E078
Tfp pilus assembly protein, ATPase PilU {ECO:0000313|EMBL:GAD22980.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
twitching motility protein; K02670 twitching motility protein PilU
scnpilot_p_inoc_scaffold_1237_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

834..1757
DNA (924bp) protein (308aa)
2-hydroxy-3-oxopropionate reductase (EC:1.1.1.60)
2-hydroxy-3-oxopropionate reductase n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWC3_ALIDB
3-hydroxyisobutyrate dehydrogenase {ECO:0000313|EMBL:GAO21440.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1237_curated_3
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1872..2537)
DNA (666bp) protein (222aa)
Putative periplasmic or secreted lipoprotein n=1 Tax=Acidovorax sp. CF316 RepID=J1EPR7_9BURK
Transporter {ECO:0000313|EMBL:KJA10878.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
transport-associated protein
scnpilot_p_inoc_scaffold_1237_curated_4
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2534..3133)
DNA (600bp) protein (200aa)
Phosphoheptose isomerase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C467_9BURK
Phosphoheptose isomerase {ECO:0000313|EMBL:EHL20581.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
phosphoheptose isomerase
scnpilot_p_inoc_scaffold_1237_curated_5
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3201..3575)
DNA (375bp) protein (125aa)
UPF0102 protein Aave_0630 n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=Y630_ACIAC
uncharacterized LOC100492036
UPF0102 protein Aave_0630 {ECO:0000255|HAMAP-Rule:MF_00048}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_1237_curated_6
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3593..4513
DNA (921bp) protein (307aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ribosomal RNA small subunit methyltransferase I; K07056 16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:2.1.1.198]
Putative S-adenosylmethionine-dependent methyltransferase, YraL family n=1 Tax=Acidovorax sp. CF316 RepID=J1EQ03_9BURK
scnpilot_p_inoc_scaffold_1237_curated_7
Xanthomonas axonopodis, Xanthomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5124..6812)
DNA (1689bp) protein (563aa)
Cytidine and deoxycytidylate deaminase zinc-binding region family protein n=1 Tax=Pseudomonas putida S610 RepID=V6J9Z2_PSEPU
Deoxycytidylate deaminase {ECO:0000313|EMBL:EWC50055.1}; TaxID=1401257 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas.;" source="Xanthomonas axonopodis pv. glycines str. 8ra.;"
Deoxycytidylate deaminase rbh
scnpilot_p_inoc_scaffold_1237_curated_8
Cupriavidus metallidurans, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8150..8425)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) RepID=Q1LAA3_RALME
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABF12923.1}; TaxID=266264 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839).;"
scnpilot_p_inoc_scaffold_1237_curated_9
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8600..11209)
DNA (2610bp) protein (870aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XGR4_VARPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGU51753.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
scnpilot_p_inoc_scaffold_1237_curated_10
Burkholderia graminis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11374..11637
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Burkholderia graminis C4D1M RepID=B1FY64_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDT11382.1}; TaxID=396598 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia graminis C4D1M.;"
scnpilot_p_inoc_scaffold_1237_curated_11
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11740..16284
DNA (4545bp) protein (1515aa)
UPI0003CF1738 related cluster n=1 Tax=unknown RepID=UPI0003CF1738
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
scnpilot_p_inoc_scaffold_1237_curated_12
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16475..18697)
DNA (2223bp) protein (741aa)
hypothetical protein n=1 Tax=Burkholderia sp. WSM4176 RepID=UPI000381621C
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
scnpilot_p_inoc_scaffold_1237_curated_13
R_Curvibacter_63_18, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18702..19880)
DNA (1179bp) protein (393aa)
hypothetical protein n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI0003720056
Tax=RIFCSPHIGHO2_12_FULL_Curvibacter_63_18_curated
scnpilot_p_inoc_scaffold_1237_curated_14
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20119..20742
DNA (624bp) protein (208aa)
integrase n=1 Tax=Limnohabitans sp. Rim28 RepID=UPI00036DF864
Putative integrase/recombinase {ECO:0000313|EMBL:ABR28414.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
phage integrase
scnpilot_p_inoc_scaffold_1237_curated_15
Sphingopyxis sp. MC1, Sphingopyxis, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21343..22212
DNA (870bp) protein (290aa)
hypothetical protein n=1 Tax=Pseudomonas alcaliphila RepID=UPI00036C534C
Uncharacterized protein {ECO:0000313|EMBL:ENY82804.1}; TaxID=1174684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingopyxis.;" source="Sphingopyxis sp. MC1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1237_curated_16
Pseudomonas moraviensis, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22507..24375
DNA (1869bp) protein (623aa)
Uncharacterized protein n=1 Tax=Pseudomonas moraviensis R28 RepID=V8R6X3_9PSED
Uncharacterized protein {ECO:0000313|EMBL:ETF07310.1}; TaxID=1395516 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas moraviensis R28-S.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1237_curated_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24468..24557
DNA (90bp) protein (30aa)
transposase IS1246 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037F40CE
Transposase IS4 family protein {ECO:0000313|EMBL:GAD24033.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
transposase IS4 family protein
Displaying 17 items

View Taxonomy