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scnpilot_p_inoc_scaffold_2200_curated

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_2200_curated_1
unknown

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comp(2..70)
DNA (69bp) protein (23aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_2200_curated_2
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(246..959)
DNA (714bp) protein (238aa)
transposase IS200 n=1 Tax=Acidovorax avenae RepID=UPI000302D222
transposase IS200-family protein; K07491 putative transposase
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_2200_curated_3
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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1049..1561
DNA (513bp) protein (171aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6Z7F6_9RHOO
ECF subfamily RNA polymerase sigma-24 factor {ECO:0000313|EMBL:ENO90497.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
scnpilot_p_inoc_scaffold_2200_curated_4
Alcanivorax dieselolei, Alcanivorax, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

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1558..2553
DNA (996bp) protein (332aa)
Anti-FecI sigma factor FecR n=1 Tax=Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5) RepID=K0CA50_ALCDB
anti-FecI sigma factor FecR
Anti-FecI sigma factor FecR {ECO:0000313|EMBL:AFT69503.1}; TaxID=930169 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Alcanivoracaceae; Alcanivorax.;" source="Alcanivorax dieselolei (strain DSM 16502 / CGMCC 1.3690 / B-5).;"
scnpilot_p_inoc_scaffold_2200_curated_5
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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2735..5233
DNA (2499bp) protein (833aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI000380C6EA
TonB-dependent siderophore receptor {ECO:0000313|EMBL:ENO90489.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
TonB-dependent siderophore receptor; K02014 iron complex outermembrane recepter protein
scnpilot_p_inoc_scaffold_2200_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(5441..6067)
DNA (627bp) protein (209aa)
Sulfoxide reductase heme-binding subunit YedZ n=1 Tax=Acidovorax sp. KKS102 RepID=K0I6N6_9BURK
ferric reductase domain-containing protein
Sulfoxide reductase heme-binding subunit YedZ {ECO:0000256|HAMAP-Rule:MF_01207, ECO:0000256|SAAS:SAAS00016679}; Flavocytochrome YedZ {ECO:0000256|HAMAP-Rule:MF_01207}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2200_curated_7
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(6068..7063)
DNA (996bp) protein (332aa)
Sulfoxide reductase catalytic subunit YedY {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016472}; EC=1.8.-.- {ECO:0000256|HAMAP-Rule:MF_01206, ECO:0000256|SAAS:SAAS00016459};; Flags: Precursor;; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Sulfoxide reductase catalytic subunit YedY n=1 Tax=Acidovorax sp. NO-1 RepID=H0BYR5_9BURK
TMAO/DMSO reductase
scnpilot_p_inoc_scaffold_2200_curated_8
Delftia tsuruhatensis, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7140..8033)
DNA (894bp) protein (298aa)
hypothetical protein id=12549504 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
SAM-dependent methyltransferase {ECO:0000313|EMBL:KEH10359.1}; TaxID=180282 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Delftia.;" source="Delftia tsuruhatensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_2200_curated_9
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8030..8626)
DNA (597bp) protein (199aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TKW5_ACIAC
hypothetical protein; K09941 hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM31603.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_2200_curated_10
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8699..9859)
DNA (1161bp) protein (387aa)
deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase [EC:3.1.5.1] id=12549502 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
deoxyguanosinetriphosphate triphosphohydrolase-like protein; K01129 dGTPase [EC:3.1.5.1]
Deoxyguanosinetriphosphate triphosphohydrolase-like protein {ECO:0000256|HAMAP-Rule:MF_01212}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_2200_curated_11
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(9909..11075)
DNA (1167bp) protein (389aa)
aroB; 3-dehydroquinate synthase; K01735 3-dehydroquinate synthase [EC:4.2.3.4]
3-dehydroquinate synthase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MDF1_ACIET
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
scnpilot_p_inoc_scaffold_2200_curated_12
Polaromonas sp. CG9_12, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11156..11704)
DNA (549bp) protein (183aa)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00109}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00109};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00109, ECO:0000313|EMBL:CDS51291.1};; TaxID=1504672 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas sp. CG9_12.;"
aroK; shikimate kinase (EC:2.7.1.71); K00891 shikimate kinase [EC:2.7.1.71]
Shikimate kinase n=1 Tax=Polaromonas sp. CF318 RepID=J3D4S7_9BURK
scnpilot_p_inoc_scaffold_2200_curated_13
Candidatus Symbiobacter mobilis, Candidatus Symbiobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11745..14201)
DNA (2457bp) protein (819aa)
Uncharacterized protein n=1 Tax=Candidatus Symbiobacter mobilis CR RepID=U5N8D7_9BURK
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGX87575.1}; TaxID=946483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae.;" source="Candidatus Symbiobacter mobilis CR.;"
scnpilot_p_inoc_scaffold_2200_curated_14
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(14232..16382)
DNA (2151bp) protein (717aa)
Type IV pilus secretin PilQ n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZR4_ACIDE
Type IV pilus secretin PilQ {ECO:0000313|EMBL:EER62230.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
type IV pilus secretin PilQ; K02666 type IV pilus assembly protein PilQ
scnpilot_p_inoc_scaffold_2200_curated_15
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16379..16927)
DNA (549bp) protein (183aa)
Pilus assembly protein PilP n=1 Tax=Acidovorax delafieldii 2AN RepID=C5SZR5_ACIDE
Pilus assembly protein PilP {ECO:0000313|EMBL:EER62231.1}; Flags: Precursor;; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Pilus assembly protein PilP; K02665 type IV pilus assembly protein PilP
scnpilot_p_inoc_scaffold_2200_curated_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(16924..17604)
DNA (681bp) protein (227aa)
pilus assembly protein PilO; K02664 type IV pilus assembly protein PilO id=12549497 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
pilus assembly protein, PilO; K02664 type IV pilus assembly protein PilO
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_2200_curated_17
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17613..18224)
DNA (612bp) protein (204aa)
Fimbrial assembly family protein n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0QAF7_ACIAP
fimbrial assembly family protein; K02663 type IV pilus assembly protein PilN
Fimbrial assembly family protein {ECO:0000313|EMBL:ADX44890.1}; Flags: Precursor;; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_2200_curated_18
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18221..19291)
DNA (1071bp) protein (357aa)
Type IV pilus assembly protein PilM n=1 Tax=Acidovorax sp. KKS102 RepID=K0I6N8_9BURK
type IV pilus assembly protein PilM
Type IV pilus assembly protein PilM {ECO:0000313|EMBL:AFU44576.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_2200_curated_19
RLO_Burkholderiales_64_33, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19544..20575
DNA (1032bp) protein (344aa)
Penicillin-binding protein, 1A family n=1 Tax=Acidovorax sp. CF316 RepID=J0KEF9_9BURK
penicillin-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_64_33_curated
Displaying 19 items

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