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scnpilot_p_inoc_scaffold_1168_curated

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Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1168_curated_1
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..926)
DNA (924bp) protein (308aa)
aspartate aminotransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000378D03C
GntR family transcriptional regulator {ECO:0000313|EMBL:GAD24248.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
aminotransferase class i and ii
scnpilot_p_inoc_scaffold_1168_curated_2
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

936..1412
DNA (477bp) protein (159aa)
Transcription activator effector binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TZD8_ALIDB
transcription activator effector binding protein; K13652 AraC family transcriptional regulator
Transcription activator effector binding protein {ECO:0000313|EMBL:GAO24545.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1168_curated_3
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1639..2277
DNA (639bp) protein (213aa)
endonuclease III / DNA-(apurinic or apyrimidinic site) lyase (EC:3.2.2.- 4.2.99.18); K10773 endonuclease III [EC:4.2.99.18]
Endonuclease III {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435}; EC=4.2.99.18 {ECO:0000256|HAMAP-Rule:MF_00942, ECO:0000256|PIRNR:PIRNR001435};; DNA-(apurinic or apyrimidinic site) lyase {ECO:0000256|HAMAP-Rule:MF_00942}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Endonuclease III n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1WAM0_ACISJ
scnpilot_p_inoc_scaffold_1168_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2289..3425
DNA (1137bp) protein (379aa)
diguanylate cyclase domain-containing protein id=12552722 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
diguanylate cyclase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1168_curated_5
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3615..4664)
DNA (1050bp) protein (350aa)
nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase (EC:2.4.2.21); K00768 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [EC:2.4.2.21]
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013344}; Short=NN:DBI PRT {ECO:0000256|HAMAP-Rule:MF_00230};; EC=2.4.2.21 {ECO:0000256|HAMAP-Rule:MF_00230, ECO:0000256|SAAS:SAAS00013328};; N(1)-alpha-phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00230}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase n=2 Tax=Alicycliphilus denitrificans RepID=E8TZE4_ALIDB
scnpilot_p_inoc_scaffold_1168_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4678..5463
DNA (786bp) protein (262aa)
Methyltransferase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I1B0_9BURK
methyltransferase
Methyltransferase {ECO:0000313|EMBL:AFU46782.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_1168_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5457..6899)
DNA (1443bp) protein (481aa)
cobyric acid synthase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003723DBE
Cobyric acid synthase {ECO:0000256|HAMAP-Rule:MF_00028, ECO:0000256|SAAS:SAAS00231811}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cobyric acid synthase CobQ
scnpilot_p_inoc_scaffold_1168_curated_8
Bradyrhizobium sp. WSM471, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7059..8246
DNA (1188bp) protein (396aa)
penicillin-binding protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI000367B11B
Penicillin-binding protein, beta-lactamase class C {ECO:0000313|EMBL:EHR02787.1}; TaxID=319017 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. WSM471.;"
hypothetical protein rbh
scnpilot_p_inoc_scaffold_1168_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8382..9377)
DNA (996bp) protein (332aa)
class I and II aminotransferase; K00817 histidinol-phosphate aminotransferase [EC:2.6.1.9]
aminotransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D6987
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase {ECO:0000313|EMBL:GAD22236.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1168_curated_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9374..10348)
DNA (975bp) protein (325aa)
cobalamin biosynthesis protein cobd; K02227 adenosylcobinamide-phosphate synthase [EC:6.3.1.10]
Cobalamin biosynthesis protein CobD n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MD36_ACIET
Cobalamin biosynthesis protein CobD {ECO:0000256|HAMAP-Rule:MF_00024}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
scnpilot_p_inoc_scaffold_1168_curated_11
R_Burkholderiales_63_240, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10414..10746)
DNA (333bp) protein (111aa)
Putative transcription regulator protein n=1 Tax=Ralstonia solanacearum CMR15 RepID=D8NCS3_RALSL
miscellaneous; not classified regulator
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_63_240_curated
scnpilot_p_inoc_scaffold_1168_curated_12
Corallococcus coralloides, Corallococcus, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10900..12192
DNA (1293bp) protein (431aa)
RCC1 repeat-containing protein n=1 Tax=Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086 / M2) RepID=H8N1J4_CORCM
RCC1 domain-containing protein, alpha-tubulin suppressor
RCC1 repeat-containing protein {ECO:0000313|EMBL:AFE04297.1}; TaxID=1144275 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Myxococcaceae; Corallococcus.;" source="Corallococcus coralloides (strain ATCC 25202 / DSM 2259 / NBRC 100086; / M2) (Myxococcus coralloides).;"
scnpilot_p_inoc_scaffold_1168_curated_13
Rubrivivax benzoatilyticus, Rubrivivax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12209..13063
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Rubrivivax benzoatilyticus JA2 = ATCC BAA-35 RepID=F3LL17_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EGJ09035.1}; TaxID=987059 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Rubrivivax.;" source="Rubrivivax benzoatilyticus JA2 = ATCC BAA-35.;"
scnpilot_p_inoc_scaffold_1168_curated_14
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13331..13597
DNA (267bp) protein (89aa)
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_1168_curated_15

Not on your lists

13665..13928
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2CXN6_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EKD97755.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
chpAI; antitoxin of a toxin-antitoxin system; pemi-like protein; K07172 antitoxin
scnpilot_p_inoc_scaffold_1168_curated_16

Not on your lists

13928..14293
DNA (366bp) protein (122aa)
chpAK; toxin of a toxin-antitoxin system, endoribonuclease; pemk-like protein; K07171 mRNA interferase [EC:3.1.-.-]
Transcriptional modulator of MazE/toxin, MazF n=1 Tax=uncultured bacterium RepID=K2EH18_9BACT
Transcriptional modulator of MazE/toxin, MazF {ECO:0000313|EMBL:EKD97754.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
scnpilot_p_inoc_scaffold_1168_curated_17
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14343..15041
DNA (699bp) protein (233aa)
Methyltransferase type 11 n=2 Tax=Alicycliphilus denitrificans RepID=E8U027_ALIDB
methyltransferase type 11
Methyltransferase type 11 {ECO:0000313|EMBL:AEB83547.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_1168_curated_18
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15117..16046)
DNA (930bp) protein (310aa)
phosphoribosylpyrophosphate synthetase (EC:2.7.6.1) id=12552104 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
phosphoribosylpyrophosphate synthetase (EC:2.7.6.1)
Phosphoribosylpyrophosphate synthetase {ECO:0000313|EMBL:KJA09482.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
scnpilot_p_inoc_scaffold_1168_curated_19
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16049..17644)
DNA (1596bp) protein (532aa)
Putative thymidine phosphorylase {ECO:0000256|HAMAP-Rule:MF_00703}; EC=2.4.2.4 {ECO:0000256|HAMAP-Rule:MF_00703};; TdRPase {ECO:0000256|HAMAP-Rule:MF_00703}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
thymidine phosphorylase (EC:2.4.2.4) id=12552103 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
thymidine phosphorylase (EC:2.4.2.4)
scnpilot_p_inoc_scaffold_1168_curated_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17995..19263)
DNA (1269bp) protein (423aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6W6_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59770.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1168_curated_21
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19434..20045)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6W7_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59771.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1168_curated_22
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20049..20375)
DNA (327bp) protein (109aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BU27_9BURK
Putative uncharacterized protein {ECO:0000313|EMBL:EHL24119.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1168_curated_23
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20930..21688)
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6W9_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59773.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_1168_curated_24
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22221..22526
DNA (306bp) protein (102aa)
Phage transcriptional regulator, AlpA n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6X0_ACIDE
Phage transcriptional regulator, AlpA {ECO:0000313|EMBL:EER59774.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
prophage CP4-57 regulatory
scnpilot_p_inoc_scaffold_1168_curated_25
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23139..24200
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6X1_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER59775.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
scnpilot_p_inoc_scaffold_1168_curated_26
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24530..26986
DNA (2457bp) protein (819aa)
Uncharacterized protein n=1 Tax=Rhodanobacter denitrificans RepID=I4WXY3_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:AIJ48573.1}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
scnpilot_p_inoc_scaffold_1168_curated_27
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27044..28918)
DNA (1875bp) protein (625aa)
DNA/RNA helicase, superfamily I n=1 Tax=Acidovorax sp. CF316 RepID=J0KMF1_9BURK
DNA/RNA helicase, superfamily I {ECO:0000313|EMBL:EJE54795.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
UvrD/REP helicase
scnpilot_p_inoc_scaffold_1168_curated_28
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(29267..30274)
DNA (1008bp) protein (336aa)
Integrase/recombinase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C0W5_9BURK
IntI1 protein {ECO:0000313|EMBL:GAO21876.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
int; phage-related integrase
scnpilot_p_inoc_scaffold_1168_curated_29

Not on your lists

30449..31093
DNA (645bp) protein (215aa)
hypothetical protein n=1 Tax=Flavobacterium antarcticum RepID=UPI0003B3F423
Marine sediment metagenome DNA, contig: S01H1_C01730 {ECO:0000313|EMBL:GAF75622.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1168_curated_30
Enterobacter cancerogenus, Enterobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31474..31701
DNA (228bp) protein (76aa)
UPI0003CEEDFF related cluster n=1 Tax=unknown RepID=UPI0003CEEDFF
Uncharacterized protein {ECO:0000313|EMBL:KGT88611.1}; TaxID=69218 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Enterobacter; Enterobacter cloacae complex.;" source="Enterobacter cancerogenus.;"
Displaying items 1-30 of 38 in total

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