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scnpilot_p_inoc_scaffold_1285_curated

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Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1285_curated_1
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..499
DNA (498bp) protein (166aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00035F8C48
dihydrolipoyl dehydrogenase-like
scnpilot_p_inoc_scaffold_1285_curated_2
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

514..1257
DNA (744bp) protein (248aa)
3-oxoacyl-ACP reductase n=1 Tax=Cupriavidus sp. WS RepID=UPI00036744B2
3-oxoacyl-[acyl-carrier-protein] reductase-like
3-oxoacyl-ACP reductase {ECO:0000313|EMBL:KDP84573.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
scnpilot_p_inoc_scaffold_1285_curated_3
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1271..2728
DNA (1458bp) protein (486aa)
Succinate-semialdehyde dehydrogenase {ECO:0000313|EMBL:KDP84574.1}; EC=1.2.1.16 {ECO:0000313|EMBL:KDP84574.1};; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
gabD4; succinate-semialdehyde dehydrogenase i, nADP-dependent (EC:1.2.1.16); K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
succinate-semialdehyde dehdyrogenase n=1 Tax=Curvibacter lanceolatus RepID=UPI00036A768E
scnpilot_p_inoc_scaffold_1285_curated_4
Cupriavidus sp. SK-3, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2732..3553
DNA (822bp) protein (274aa)
hypothetical protein n=1 Tax=Cupriavidus sp. WS RepID=UPI00036A2392
Shikimate dehydrogenase {ECO:0000313|EMBL:KDP84575.1}; TaxID=1470558 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus sp. SK-3.;"
shikimate/quinate 5-dehydrogenase family protein 2
scnpilot_p_inoc_scaffold_1285_curated_5
Burkholderia glumae, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3645..5708)
DNA (2064bp) protein (688aa)
hypothetical protein n=1 Tax=Pusillimonas noertemannii RepID=UPI00031D761B
peptidase C11 clostripain
Peptidase C11 clostripain {ECO:0000313|EMBL:ACR31688.1}; TaxID=626418 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia glumae (strain BGR1).;"
scnpilot_p_inoc_scaffold_1285_curated_6
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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comp(5765..7609)
DNA (1845bp) protein (615aa)
TAP domain protein n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8UA72_DEIML
TAP domain-containing protein
TAP domain protein {ECO:0000313|EMBL:ADV67961.1}; TaxID=709986 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946; / LB-34).;"
scnpilot_p_inoc_scaffold_1285_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7647..9419)
DNA (1773bp) protein (591aa)
UPI00039C980D related cluster n=1 Tax=unknown RepID=UPI00039C980D
Uncharacterized protein {ECO:0000313|EMBL:GAD24693.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cell surface receptor IPT/TIG domain-containing protein
scnpilot_p_inoc_scaffold_1285_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9711..10394
DNA (684bp) protein (228aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036CF9E4
oxygen regulatory protein nreC-like
Response regulator {ECO:0000313|EMBL:GAD24722.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_1285_curated_9
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10394..12334
DNA (1941bp) protein (647aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003782171
Uncharacterized protein {ECO:0000313|EMBL:GAD24719.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
periplasmic sensor signal transduction histidine kinase 3
scnpilot_p_inoc_scaffold_1285_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12369..12935)
DNA (567bp) protein (189aa)
hypothetical protein id=12550446 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1285_curated_11
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12932..13567)
DNA (636bp) protein (212aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TV17_ALIDB
hypothetical protein; K07152
Electron transport protein SCO1/SenC {ECO:0000313|EMBL:GAO22326.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
scnpilot_p_inoc_scaffold_1285_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13723..14373)
DNA (651bp) protein (217aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8TV16_ALIDB
cytochrome c class I
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1285_curated_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14370..14957)
DNA (588bp) protein (196aa)
cytochrome c oxidase, mono-heme subunit/FixO; K00405 cytochrome c oxidase cbb3-type subunit II id=12550443 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cytochrome c oxidase mono-heme subunit/fixo; K00405 cytochrome c oxidase cbb3-type subunit II
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1285_curated_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14947..16596)
DNA (1650bp) protein (550aa)
cytochrome c oxidase subunit I; K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1] id=12550442 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
cytochrome-c oxidase (EC:1.9.3.1); K00404 cytochrome c oxidase cbb3-type subunit I [EC:1.9.3.1]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1285_curated_15
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16837..18291
DNA (1455bp) protein (485aa)
transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036D6C8F
Outer membrane efflux protein {ECO:0000313|EMBL:GAD20988.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
outer membrane efflux protein
scnpilot_p_inoc_scaffold_1285_curated_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18288..19286
DNA (999bp) protein (333aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037EA2E5
Membrane-fusion protein {ECO:0000313|EMBL:GAD20989.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
secretion protein HlyD family protein; K01993 HlyD family secretion protein
scnpilot_p_inoc_scaffold_1285_curated_17
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19283..20458
DNA (1176bp) protein (392aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003811F8E
ABC-type multidrug transport system, permease component {ECO:0000313|EMBL:GAD20990.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ABC transporter; K09686 antibiotic transport system permease protein
scnpilot_p_inoc_scaffold_1285_curated_18
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20552..21676
DNA (1125bp) protein (375aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368AF10
ABC-type multidrug transport system, permease component {ECO:0000313|EMBL:GAD20991.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ABC transporter; K09686 antibiotic transport system permease protein
scnpilot_p_inoc_scaffold_1285_curated_19
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21683..22762)
DNA (1080bp) protein (360aa)
putative acetyl esterase (EC:3.1.1.6); K05968 [EC:3.1.1.6]
Putative acetyl esterase n=1 Tax=Thauera phenylacetica B4P RepID=N6ZXS8_9RHOO
Putative acetyl esterase {ECO:0000313|EMBL:ENO99158.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
scnpilot_p_inoc_scaffold_1285_curated_20
Thauera phenylacetica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22838..23707
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Thauera phenylacetica B4P RepID=N6ZXE3_9RHOO
Uncharacterized protein {ECO:0000313|EMBL:ENO99157.1}; TaxID=1234382 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera phenylacetica B4P.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1285_curated_21
Methylomonas denitrificans, Methylomonas, Methylococcales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(23668..24264)
DNA (597bp) protein (199aa)
Uncharacterized protein {ECO:0000313|EMBL:KHD32527.1}; TaxID=1538553 species="Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylomonas.;" source="Methylomonas denitrificans.;"
Putative uncharacterized protein id=3370346 bin=GWF2_Geobacter_54_21 species=Sideroxydans lithotrophicus genus=Sideroxydans taxon_order=Gallionellales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF2_Geobacter_54_21 organism_group=Deltaproteobacteria organism_desc=Good
hypothetical protein
scnpilot_p_inoc_scaffold_1285_curated_22
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24273..24608)
DNA (336bp) protein (112aa)
UPF0060 membrane protein PST_2099 n=4 Tax=Pseudomonas stutzeri RepID=A4VLB4_PSEU5
putative inner membrane lipoprotein; K09771 hypothetical protein
UPF0060 membrane protein PSTAB_1990 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=96563 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri (strain ATCC 17588 / DSM 5190 / CCUG 11256 / JCM; 5965 / LMG 11199 / NCIMB 11358 / Stanier 221).;"
scnpilot_p_inoc_scaffold_1285_curated_23
Bradyrhizobium sp. CCGE-LA001, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(24695..25141)
DNA (447bp) protein (149aa)
hypothetical protein n=1 Tax=Bradyrhizobium japonicum RepID=UPI0003682B37
Uncharacterized protein {ECO:0000313|EMBL:EJZ35735.1}; TaxID=1223566 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. CCGE-LA001.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1285_curated_24
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25299..25433)
DNA (135bp) protein (45aa)
Substrate-binding region of ABC-type glycine betaine transport system n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TM97_ACIAC
proX; glycine betaine transporter periplasmic subunit; K02002 glycine betaine/proline transport system substrate-binding protein
Substrate-binding region of ABC-type glycine betaine transport system {ECO:0000313|EMBL:ABM32085.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
Displaying 24 items

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