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scnpilot_p_inoc_scaffold_839_curated

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Displaying items 1-30 of 34 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_839_curated_1
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1907)
DNA (1905bp) protein (635aa)
Flagellar hook-associated protein FlgK n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T7T9_ACIDE
Flagellar hook-associated protein FlgK {ECO:0000313|EMBL:EER59458.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
flagellar hook-associated protein flgk; K02396 flagellar hook-associated protein 1 FlgK
scnpilot_p_inoc_scaffold_839_curated_2
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1927..2826)
DNA (900bp) protein (300aa)
Flagellar rod assembly protein/muramidase FlgJ n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TVI1_ACIAC
flagellar rod assembly protein/muramidase FlgJ; K02395 flagellar protein FlgJ
Flagellar rod assembly protein/muramidase FlgJ {ECO:0000313|EMBL:ABM34969.1}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_839_curated_3
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2829..3953)
DNA (1125bp) protein (375aa)
flagellar P-ring protein FlgI n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D2911
Flagellar P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Basal body P-ring protein {ECO:0000256|HAMAP-Rule:MF_00416}; Flags: Precursor;; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
flagellar P-ring protein; K02394 flagellar P-ring protein precursor FlgI
scnpilot_p_inoc_scaffold_839_curated_4
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4142..5113
DNA (972bp) protein (324aa)
Tyrosine recombinase XerC n=2 Tax=Alicycliphilus denitrificans RepID=E8TRW9_ALIDB
tyrosine recombinase xerc; K03733 integrase/recombinase XerC
Tyrosine recombinase XerC {ECO:0000256|HAMAP-Rule:MF_01808}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_839_curated_5
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5300..6739)
DNA (1440bp) protein (480aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G555_ALIDK
PAS/PAC sensor signal transduction histidine kinase
scnpilot_p_inoc_scaffold_839_curated_6
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6836..7915
DNA (1080bp) protein (360aa)
Cobalamin synthesis protein P47K n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7X7_ACIAP
cobalamin synthesis protein P47K
Cobalamin synthesis protein P47K {ECO:0000313|EMBL:ADX44661.1}; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
scnpilot_p_inoc_scaffold_839_curated_7
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8136..8627
DNA (492bp) protein (164aa)
UPI0003D3F699 related cluster n=1 Tax=unknown RepID=UPI0003D3F699
TraR/DksA family transcriptional regulator; K06204 DnaK suppressor protein
RNA polymerase-binding transcription factor DksA {ECO:0000256|HAMAP-Rule:MF_00926}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_839_curated_8
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8677..10362
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T627_ACIDE
Uncharacterized protein {ECO:0000313|EMBL:EER60064.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
hypothetical protein
scnpilot_p_inoc_scaffold_839_curated_9
Acidovorax avenae, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10561..11109
DNA (549bp) protein (183aa)
ATP-dependent protease HslVU, peptidase subunit; K01419 ATP-dependent HslUV protease, peptidase subunit HslV [EC:3.4.25.2]
ATP-dependent protease subunit HslV {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019556}; EC=3.4.25.2 {ECO:0000256|HAMAP-Rule:MF_00248, ECO:0000256|SAAS:SAAS00019493};; TaxID=643561 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB; 1011).;"
ATP-dependent protease subunit HslV n=1 Tax=Acidovorax avenae (strain ATCC 19860 / DSM 7227 / JCM 20985 / NCPPB 1011) RepID=F0Q7Y0_ACIAP
scnpilot_p_inoc_scaffold_839_curated_10
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11175..12506
DNA (1332bp) protein (444aa)
ATP-dependent protease ATPase subunit HslU n=1 Tax=Acidovorax sp. (strain JS42) RepID=HSLU_ACISJ rbh
hslU; ATP-dependent protease ATP-binding subunit HslU; K03667 ATP-dependent HslUV protease ATP-binding subunit HslU
ATP-dependent protease ATPase subunit HslU {ECO:0000255|HAMAP-Rule:MF_00249}; Unfoldase HslU {ECO:0000255|HAMAP-Rule:MF_00249}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_839_curated_11
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12597..13682)
DNA (1086bp) protein (362aa)
Sigma-54 interaction domain protein n=2 Tax=Ralstonia RepID=E2SV75_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EGY61818.1}; TaxID=658080 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
sigma-54 dependent trancsriptional regulator
scnpilot_p_inoc_scaffold_839_curated_12
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13705..14880)
DNA (1176bp) protein (392aa)
Acyl-CoA dehydrogenase n=1 Tax=Ralstonia pickettii OR214 RepID=R0CF98_RALPI
Monooxygenase {ECO:0000313|EMBL:KHK95118.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
putative monooxygenase
scnpilot_p_inoc_scaffold_839_curated_13
Agrobacterium vitis, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14907..16247)
DNA (1341bp) protein (447aa)
Uncharacterized protein n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9K4R7_AGRVS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACM39865.1}; TaxID=311402 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium vitis (strain S4 / ATCC BAA-846) (Rhizobium vitis; (strain S4)).;"
scnpilot_p_inoc_scaffold_839_curated_14
Pseudomonas sp. RIT357, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16282..17343)
DNA (1062bp) protein (354aa)
hypothetical protein n=1 Tax=Xanthobacteraceae RepID=UPI00037CB253
Putative branched-chain amino acid ABC transporter permease {ECO:0000313|EMBL:EZP64347.1}; TaxID=1470593 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. RIT357.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_839_curated_15
Pseudomonas fulva, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17347..18228)
DNA (882bp) protein (294aa)
ABC transporter permease n=1 Tax=Xanthobacteraceae RepID=UPI000365CBE6
Strain MEJ086 contig_8, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ04380.1}; TaxID=47880 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas fulva.;"
livH; inner-membrane translocator
scnpilot_p_inoc_scaffold_839_curated_16
Pseudomonas sp. GM60, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18225..19043)
DNA (819bp) protein (273aa)
branched-chain amino acid ABC transporter ATP-binding protein n=1 Tax=Pseudomonas sp. CBZ-4 RepID=UPI00034D6FAC
ABC-type branched-chain amino acid transport system, ATPase component {ECO:0000313|EMBL:EJM82511.1}; Flags: Precursor;; TaxID=1144334 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. GM60.;"
ABC transporter, LivG family
scnpilot_p_inoc_scaffold_839_curated_17
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19045..20448)
DNA (1404bp) protein (468aa)
Nitrilotriacetate monooxygenase component a/pristinamycin iia synthase subunit a n=1 Tax=Thauera sp. 27 RepID=N6XAG8_9RHOO
Nitrilotriacetate monooxygenase component a/pristinamycin iia synthase subunit a {ECO:0000313|EMBL:ENO78726.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
nitrilotriacetate monooxygenase
scnpilot_p_inoc_scaffold_839_curated_18
Aquitalea magnusonii, Aquitalea, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20471..21721)
DNA (1251bp) protein (417aa)
Acyl-CoA dehydrogenase, type 2, C-terminal domain protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VJP6_POLNA
Monooxygenase {ECO:0000313|EMBL:KJV25846.1}; TaxID=332411 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Aquitalea.;" source="Aquitalea magnusonii.;"
acyl-CoA dehydrogenase type 2
scnpilot_p_inoc_scaffold_839_curated_19
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21835..22647)
DNA (813bp) protein (271aa)
ABC transporter related protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6UX24_VARPE
ABC transporter; K01996 branched-chain amino acid transport system ATP-binding protein
ABC transporter related protein {ECO:0000313|EMBL:ADU37660.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
scnpilot_p_inoc_scaffold_839_curated_20
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22668..23933)
DNA (1266bp) protein (422aa)
Acyl-CoA dehydrogenase n=1 Tax=Ralstonia pickettii OR214 RepID=R0E077_RALPI
Uncharacterized protein {ECO:0000313|EMBL:EGY61821.1}; TaxID=658080 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
acyL-CoA dehydrogenase type 2 domain
scnpilot_p_inoc_scaffold_839_curated_21
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23946..25271)
DNA (1326bp) protein (442aa)
Uncharacterized protein n=2 Tax=Ralstonia RepID=E2SV79_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EGY61822.1}; TaxID=658080 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
hypothetical protein; K01999 branched-chain amino acid transport system substrate-binding protein
scnpilot_p_inoc_scaffold_839_curated_22
Ralstonia sp. 5_2_56FAA, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25268..26326)
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Ralstonia sp. 5_2_56FAA RepID=U3G8N6_9RALS
Uncharacterized protein {ECO:0000313|EMBL:EGY61823.1}; TaxID=658080 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia sp. 5_2_56FAA.;"
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein
scnpilot_p_inoc_scaffold_839_curated_23
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26332..27228)
DNA (897bp) protein (299aa)
ABC transporter permease n=1 Tax=Variovorax paradoxus RepID=UPI00036EE96A
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Inner-membrane translocator {ECO:0000313|EMBL:ADU37663.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
scnpilot_p_inoc_scaffold_839_curated_24
Ralstonia pickettii, Ralstonia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27228..28049)
DNA (822bp) protein (274aa)
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family n=1 Tax=Ralstonia pickettii OR214 RepID=R0CG17_RALPI
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family {ECO:0000313|EMBL:ENZ75560.1}; TaxID=1264675 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia pickettii OR214.;"
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein
scnpilot_p_inoc_scaffold_839_curated_25
Paenirhodobacter enshiensis, Paenirhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28063..29481)
DNA (1419bp) protein (473aa)
N5,N10-methylene tetrahydromethanopterin reductase n=1 Tax=Paracoccus sp. TRP RepID=UPI000225F843
5,10-methylene tetrahydromethanopterin reductase {ECO:0000313|EMBL:KFI26459.1}; TaxID=1105367 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paenirhodobacter.;" source="Paenirhodobacter enshiensis.;"
coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
scnpilot_p_inoc_scaffold_839_curated_26
Mumia flava, Mumia, Propionibacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29510..30097)
DNA (588bp) protein (196aa)
fmn reductase; K00299 FMN reductase [EC:1.5.1.38]
FMN reductase n=2 Tax=Ralstonia RepID=E2SV84_9RALS
NADH-dependent FMN reductase {ECO:0000313|EMBL:KHL06439.1}; TaxID=1348852 species="Bacteria; Actinobacteria; Propionibacteriales; Nocardioidaceae; Mumia.;" source="Mumia flava.;"
scnpilot_p_inoc_scaffold_839_curated_27
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30642..31598
DNA (957bp) protein (319aa)
rhodanese domain-containing protein; K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
sulfurtransferase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003697821
Sulfurtransferase {ECO:0000256|RuleBase:RU000507}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
scnpilot_p_inoc_scaffold_839_curated_28
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31685..32878
DNA (1194bp) protein (398aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036EAF73
YeeE/YedE family protein {ECO:0000313|EMBL:GAD21615.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein; K07112
scnpilot_p_inoc_scaffold_839_curated_29
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33230..33607
DNA (378bp) protein (126aa)
Protein MraZ n=2 Tax=Acidovorax RepID=MRAZ_ACIET
protein mraZ-like
Transcriptional regulator MraZ; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_839_curated_30
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33617..34546
DNA (930bp) protein (310aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1392005 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni TK102.;"
mraW; S-adenosyl-methyltransferase MraW; K03438 16S rRNA (cytosine1402-N4)-methyltransferase [EC:2.1.1.199]
Ribosomal RNA small subunit methyltransferase H n=1 Tax=Comamonas testosteroni KF-1 RepID=B7WTF3_COMTE
Displaying items 1-30 of 34 in total

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