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scnpilot_p_inoc_scaffold_2041_curated_2

Organism: scnpilot_dereplicated_Burkholderiales_8

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: 551..1090

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor, FecI family n=1 Tax=Pseudomonas mendocina (strain NK-01) RepID=F4DXX5_PSEMN similarity UNIREF
DB: UNIREF100
  • Identity: 46.6
  • Coverage: 176.0
  • Bit_score: 162
  • Evalue 4.50e-37
FecI family RNA polymerase sigma factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 46.6
  • Coverage: 176.0
  • Bit_score: 162
  • Evalue 1.40e-37
RNA polymerase sigma factor, FecI family {ECO:0000313|EMBL:AEB56327.1}; TaxID=1001585 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas mendocina (strain NK-01).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.6
  • Coverage: 176.0
  • Bit_score: 162
  • Evalue 6.40e-37

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Taxonomy

Pseudomonas mendocina → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 540
GTGTCTTCCTCCCCGGCTTCTCCTCTGGTCGCCGCGCTGGCGCTGCACTACGACGAACTGGTCAGCTACGTGCGGCAGCGGTTCGCGGGCAGGGACTGCGCGCACGATGCCGTCCATGCCGTGTGCGTGCGGGTGCTTGAAGCGCCGCACGCCGCCGACGTGCACACGCCGCTGGCCTACTTGCGGCGCGCGGTGCTGCACCAAGCCATCGATTTCTGCCGCCATGACGATGTTCGCGCGGCGCTGATCGAAAGCCGGGCCGAGCCGCCCGAAGCCTTCGCGGCCGGGGGGGATGGCGAAGCCGCGCTCGCATTCAAGCGCGAGGTGCAGGCGCTGGCGCGCATTGTGGAGGCTATGCCGCCACGCGCGCGCCAGGTCTTCCTGCTGCATTGCGTGCATGGCATGGGCCACCAGGAGATCGCTGAGGCCATCGGCGTGACCCGCAGCATGGTCAGCCACCATGCCGCGCGGGCCCTGCGCGACGTCGCGCTCCGCTGGGCGCCCGCGCGCGCCTTGTACCGCAGCGCGGGCGGCGTGTGA
PROTEIN sequence
Length: 180
VSSSPASPLVAALALHYDELVSYVRQRFAGRDCAHDAVHAVCVRVLEAPHAADVHTPLAYLRRAVLHQAIDFCRHDDVRAALIESRAEPPEAFAAGGDGEAALAFKREVQALARIVEAMPPRARQVFLLHCVHGMGHQEIAEAIGVTRSMVSHHAARALRDVALRWAPARALYRSAGGV*