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scnpilot_p_inoc_scaffold_3252_curated_8

Organism: scnpilot_dereplicated_Burkholderiales_8

near complete RP 51 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38 MC: 1
Location: comp(6543..6797)

Top 3 Functional Annotations

Value Algorithm Source
RNA-binding protein Hfq n=1 Tax=Acidovorax sp. NO-1 RepID=H0C0U5_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 95.2
  • Coverage: 83.0
  • Bit_score: 159
  • Evalue 1.80e-36
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.2
  • Coverage: 83.0
  • Bit_score: 159
  • Evalue 2.50e-36
hfq; RNA-binding protein Hfq similarity KEGG
DB: KEGG
  • Identity: 92.9
  • Coverage: 84.0
  • Bit_score: 157
  • Evalue 1.70e-36

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Taxonomy

Acidovorax sp. NO-1 → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 255
GTGAGCAACAAAGGCCAACTCCTCCAAGACCCGTTCCTGAACGCGCTGCGCCGCGAGCATGTGCCGGTCTCCATCTATCTGGTCAACGGCATCAAGCTGCAGGGCCAGATCGAATCCTTCGACCAGTACGTTGTGCTGCTGCGCAACACCGTGACACAAATGGTCTACAAGCACGCCATCTCCACCATTGTTCCTGGCCGCGCCGTGAATTTCTCCACGGCCGACACTGCGGACAGCGACGCCAGCGGCTCCTGA
PROTEIN sequence
Length: 85
VSNKGQLLQDPFLNALRREHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTIVPGRAVNFSTADTADSDASGS*