ggKbase home page

scnpilot_p_inoc_scaffold_3252_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_3252_curated_1
Hydrogenophaga sp. PBC, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..131)
DNA (129bp) protein (43aa)
Uncharacterized protein n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MP71_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EIK91011.1}; TaxID=795665 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. PBC.;"
phosphoribosyltransferase; K07101
scnpilot_p_inoc_scaffold_3252_curated_2
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(151..1527)
DNA (1377bp) protein (459aa)
Adenylosuccinate synthetase n=1 Tax=uncultured bacterium RepID=K2CYS9_9BACT
adenylosuccinate synthetase-like
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_3252_curated_3
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1557..2705)
DNA (1149bp) protein (383aa)
ATP phosphoribosyltransferase regulatory subunit n=1 Tax=Acidovorax sp. CF316 RepID=J1ER70_9BURK
ATP phosphoribosyltransferase regulatory subunit {ECO:0000256|HAMAP-Rule:MF_00125, ECO:0000256|SAAS:SAAS00089029}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
histidyl-tRNA synthetase 2; K02502 ATP phosphoribosyltransferase regulatory subunit
scnpilot_p_inoc_scaffold_3252_curated_4
CG_Rhodof_03, Rhodoferax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2788..3039)
DNA (252bp) protein (84aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2DKR9_9BACT
hypothetical protein
Tax=CG_Rhodof_03
scnpilot_p_inoc_scaffold_3252_curated_5
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2996..3907)
DNA (912bp) protein (304aa)
membrane protein n=1 Tax=Acidovorax radicis RepID=UPI000237867D
HflC protein
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_3252_curated_6
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3917..5221)
DNA (1305bp) protein (435aa)
HflK protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZT6_9BURK
HflK protein
HflK protein {ECO:0000313|EMBL:AFU45390.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_3252_curated_7
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5304..6482)
DNA (1179bp) protein (393aa)
GTPase HflX n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TM33_ACIAC
GTP-binding protein; K03665 GTP-binding protein HflX
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_3252_curated_8
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6543..6797)
DNA (255bp) protein (85aa)
RNA-binding protein Hfq n=1 Tax=Acidovorax sp. NO-1 RepID=H0C0U5_9BURK
RNA-binding protein Hfq {ECO:0000256|HAMAP-Rule:MF_00436, ECO:0000256|SAAS:SAAS00067493}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
hfq; RNA-binding protein Hfq
scnpilot_p_inoc_scaffold_3252_curated_9
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6883..8223)
DNA (1341bp) protein (447aa)
GTPase Der n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4C1_ACIDE
GTP-binding protein Der
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_3252_curated_10
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8243..9400)
DNA (1158bp) protein (386aa)
Outer membrane protein assembly factor BamB n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TM30_ACIAC
Pyrrolo-quinoline quinone
Outer membrane protein assembly factor BamB {ECO:0000256|HAMAP-Rule:MF_00923}; Flags: Precursor;; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_3252_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9397..10071)
DNA (675bp) protein (225aa)
hypothetical protein id=12552289 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_3252_curated_12
Hylemonella gracilis, Hylemonella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(10089..11444)
DNA (1356bp) protein (452aa)
Histidine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629}; EC=6.1.1.21 {ECO:0000256|HAMAP-Rule:MF_00127, ECO:0000256|SAAS:SAAS00043629};; Histidyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00127}; TaxID=1458275 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hylemonella.;" source="Hylemonella gracilis str. Niagara R.;"
hisS; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21]
Histidine--tRNA ligase n=1 Tax=Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543 / TTB310) RepID=F5XX42_RAMTT
scnpilot_p_inoc_scaffold_3252_curated_13
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11543..12802)
DNA (1260bp) protein (420aa)
ispG; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (EC:1.17.7.1)
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C0U9_9BURK
Tax=GWA2_Burkholderiales_64_37_curated
scnpilot_p_inoc_scaffold_3252_curated_14
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12811..13707)
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Acidovorax sp. CF316 RepID=J1ER79_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EJE54644.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
hypothetical protein; K15539 cytoskeleton protein RodZ
scnpilot_p_inoc_scaffold_3252_curated_15
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13700..14524)
DNA (825bp) protein (275aa)
pilus assembly protein PilW n=1 Tax=Acidovorax radicis RepID=UPI0002378336
type IV pilus biogenesis/stability protein PilW
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_3252_curated_16
Delftia acidovorans, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14558..15676)
DNA (1119bp) protein (373aa)
Dual-specificity RNA methyltransferase RlmN {ECO:0000256|HAMAP-Rule:MF_01849}; EC=2.1.1.192 {ECO:0000256|HAMAP-Rule:MF_01849};; 23S rRNA (adenine(2503)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; 23S rRNA m2A2503 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; Ribosomal RNA large subunit methyltransferase N {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA (adenine(37)-C(2))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; tRNA m2A37 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01849}; TaxID=8
radical SAM protein; K06941 23S rRNA (adenine2503-C2)-methyltransferase [EC:2.1.1.192]
Dual-specificity RNA methyltransferase RlmN n=3 Tax=Bacteria RepID=S2WP39_DELAC
scnpilot_p_inoc_scaffold_3252_curated_17
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15718..16143)
DNA (426bp) protein (142aa)
Nucleoside diphosphate kinase {ECO:0000256|HAMAP-Rule:MF_00451}; Short=NDK {ECO:0000256|HAMAP-Rule:MF_00451};; Short=NDP kinase {ECO:0000256|HAMAP-Rule:MF_00451};; EC=2.7.4.6 {ECO:0000256|HAMAP-Rule:MF_00451};; Nucleoside-2-P kinase {ECO:0000256|HAMAP-Rule:MF_00451}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ndk; nucleoside diphosphate kinase (EC:2.7.4.6); K00940 nucleoside-diphosphate kinase [EC:2.7.4.6]
Nucleoside diphosphate kinase n=1 Tax=Acidovorax sp. CF316 RepID=J0UEU4_9BURK
scnpilot_p_inoc_scaffold_3252_curated_18
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16243..17451)
DNA (1209bp) protein (403aa)
ribosomal large subunit pseudouridine synthase B (EC:5.4.99.-); K06178 23S rRNA pseudouridine2605 synthase [EC:5.4.99.22]
Pseudouridine synthase {ECO:0000256|RuleBase:RU003887}; EC=5.4.99.- {ECO:0000256|RuleBase:RU003887};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Pseudouridine synthase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W572_ACISJ
scnpilot_p_inoc_scaffold_3252_curated_19
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17448..18083)
DNA (636bp) protein (212aa)
UPI0003A4125E related cluster n=1 Tax=unknown RepID=UPI0003A4125E
Segregation and condensation protein B {ECO:0000256|SAAS:SAAS00086417}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
chromosome segregation and condensation protein ScpB; K06024 segregation and condensation protein B
scnpilot_p_inoc_scaffold_3252_curated_20
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18232..19242)
DNA (1011bp) protein (337aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
Pseudouridine synthase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T4B0_ACIDE
ribosomal large subunit pseudouridine synthase D-like
scnpilot_p_inoc_scaffold_3252_curated_21
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19254..20123)
DNA (870bp) protein (290aa)
Peptidase M23 n=1 Tax=Acidovorax sp. KKS102 RepID=K0HZS6_9BURK
peptidase M23
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
Displaying 21 items

View Taxonomy