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scnpilot_p_inoc_scaffold_1428_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1428_curated_1
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2..295
DNA (294bp) protein (98aa)
s-adenosyl-l-homocysteine hydrolase (EC:3.3.1.1); K01251 adenosylhomocysteinase [EC:3.3.1.1]
Adenosylhomocysteinase {ECO:0000255|HAMAP-Rule:MF_00563}; EC=3.3.1.1 {ECO:0000255|HAMAP-Rule:MF_00563};; S-adenosyl-L-homocysteine hydrolase {ECO:0000255|HAMAP-Rule:MF_00563}; Short=AdoHcyase {ECO:0000255|HAMAP-Rule:MF_00563};; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
Adenosylhomocysteinase n=1 Tax=Acidovorax sp. (strain JS42) RepID=SAHH_ACISJ
scnpilot_p_inoc_scaffold_1428_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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371..1357
DNA (987bp) protein (329aa)
ribosomal RNA methyltransferase RrmJ/FtsJ; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227] id=12550462 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ribosomal RNA methyltransferase RrmJ/FtsJ; K06442 23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:2.1.1.226 2.1.1.227]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_3
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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1354..2223
DNA (870bp) protein (290aa)
5,10-methylenetetrahydrofolate reductase id=12550463 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
5,10-methylenetetrahydrofolate reductase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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2259..2882
DNA (624bp) protein (208aa)
hypothetical protein id=12550464 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2883..3749)
DNA (867bp) protein (289aa)
Ribosomal RNA large subunit methyltransferase J n=2 Tax=Alicycliphilus denitrificans RepID=E8TYU9_ALIDB
hypothetical protein; K07115
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4056..6005
DNA (1950bp) protein (650aa)
protein kinase id=12550466 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
protein kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_7
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6163..6657
DNA (495bp) protein (165aa)
50S ribosomal protein L13 n=1 Tax=Acidovorax avenae RepID=UPI0002E8AB4B
rplM; 50S ribosomal protein l13; K02871 large subunit ribosomal protein L13
50S ribosomal protein L13 {ECO:0000255|HAMAP-Rule:MF_01366}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_1428_curated_8
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6669..7061
DNA (393bp) protein (131aa)
30S ribosomal protein S9 n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000368982C
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003816}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
30S ribosomal protein S9; K02996 small subunit ribosomal protein S9
scnpilot_p_inoc_scaffold_1428_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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7189..7932
DNA (744bp) protein (248aa)
hypothetical protein id=12550469 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8009..8407
DNA (399bp) protein (133aa)
hypothetical protein id=12550470 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8464..8832
DNA (369bp) protein (123aa)
erpA; putative iron-sulfur cluster insertion protein ErpA id=12550471 bin=BDI species=unknown genus=Variovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
erpA; putative iron-sulfur cluster insertion protein ErpA
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8860..9969)
DNA (1110bp) protein (370aa)
anmK; anhydro-N-acetylmuramic acid kinase id=12550472 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
anmK; anhydro-N-acetylmuramic acid kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10013..11452)
DNA (1440bp) protein (480aa)
peptidase M23B id=12550473 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
peptidase M23B
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1428_curated_14
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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11562..12791
DNA (1230bp) protein (410aa)
tyrosyl-tRNA ligase (EC:6.1.1.1)
Tyrosine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716}; EC=6.1.1.1 {ECO:0000256|HAMAP-Rule:MF_02007, ECO:0000256|SAAS:SAAS00105716};; Tyrosyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02007}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
Tyrosine--tRNA ligase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I3Q2_9BURK
scnpilot_p_inoc_scaffold_1428_curated_15
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(12890..13879)
DNA (990bp) protein (330aa)
Transcriptional regulator, LysR family n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TUE7_ACIAC
LysR family transcriptional regulator
Transcriptional regulator, LysR family {ECO:0000313|EMBL:ABM34585.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_1428_curated_16
Acidovorax sp. MR-S7, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13989..14210
DNA (222bp) protein (74aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A4C89
Uncharacterized protein {ECO:0000313|EMBL:GAD20355.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1428_curated_17

Not on your lists

14487..15938
DNA (1452bp) protein (484aa)
Bifunctional protein GlmU n=1 Tax=uncultured bacterium A1Q1_fos_660 RepID=L7VU60_9BACT
Bifunctional protein GlmU {ECO:0000256|HAMAP-Rule:MF_01631, ECO:0000256|SAAS:SAAS00083647}; TaxID=1256588 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_660.;"
UDP-N-acetylglucosamine pyrophosphorylase
scnpilot_p_inoc_scaffold_1428_curated_18

Not on your lists

15935..16741
DNA (807bp) protein (269aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1256588 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_660.;"
Phytochrome, two-component sensor histidine kinase n=1 Tax=uncultured bacterium A1Q1_fos_660 RepID=L7VVC5_9BACT
histidine kinase
scnpilot_p_inoc_scaffold_1428_curated_19

Not on your lists

comp(16766..17257)
DNA (492bp) protein (164aa)
Transcriptional regulator, AsnC family n=1 Tax=uncultured bacterium A1Q1_fos_660 RepID=L7VPZ0_9BACT
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:AGC70957.1}; TaxID=1256588 species="Bacteria; environmental samples.;" source="uncultured bacterium A1Q1_fos_660.;"
asnC family transcriptional regulator
scnpilot_p_inoc_scaffold_1428_curated_20

Not on your lists

17398..19296
DNA (1899bp) protein (633aa)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; GFAT {ECO:0000256|HAMAP-Rule:MF_00164}; Glucosamine-6-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00164}; Hexosephosphate aminotransferase {ECO:0000256|HAMAP-Rule:MF_00164}; L-glutamine--D-fructose-6-phosphate amidotransferase {ECO:0000256|HAMAP-Rule:MF_0016
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] n=1 Tax=uncultured bacterium A1Q1_fos_660 RepID=L7VXS6_9BACT
scnpilot_p_inoc_scaffold_1428_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19622..20533)
DNA (912bp) protein (304aa)
gcn5-related n-acetyltransferase; K06140 regulator of nucleoside diphosphate kinase id=12549651 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
gcn5-related n-acetyltransferase; K06140 regulator of nucleoside diphosphate kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying 21 items

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