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scnpilot_p_inoc_scaffold_628_curated

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Displaying items 1-30 of 52 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_628_curated_1
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

235..1317
DNA (1083bp) protein (361aa)
Extracellular solute-binding protein, family 7 n=2 Tax=Alicycliphilus denitrificans RepID=E8U277_ALIDB
ABC transporter substrate-binding protein
Extracellular solute-binding protein, family 7 {ECO:0000313|EMBL:AEB86095.1}; Flags: Precursor;; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_628_curated_2
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1431..3251)
DNA (1821bp) protein (607aa)
TRAP dicarboxylate transporter, DctM subunit n=2 Tax=Alicycliphilus denitrificans RepID=E8U279_ALIDB
trap dicarboxylate transporter, dctm subunit
TRAP dicarboxylate transporter, DctM subunit {ECO:0000313|EMBL:ADU98883.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_628_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3275..3874)
DNA (600bp) protein (200aa)
Tripartite ATP-independent periplasmic transporter DctQ component n=2 Tax=Alicycliphilus denitrificans RepID=E8U280_ALIDB
tripartite ATP-independent periplasmic transporter dctq component
Tripartite ATP-independent periplasmic transporter DctQ component {ECO:0000313|EMBL:AEB86092.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_628_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4359..6278
DNA (1920bp) protein (640aa)
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=12552964 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
thrS; threonyl-tRNA synthetase (EC:3.1.1.- 6.1.1.3); K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_5
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6356..6958
DNA (603bp) protein (201aa)
Translation initiation factor IF-3 n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W8I5_ACISJ
translation initiation factor 3; K02520 translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_628_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7136..7339
DNA (204bp) protein (68aa)
50S ribosomal protein L35; K02916 large subunit ribosomal protein L35 id=12552966 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
rpmI; 50S ribosomal protein L35
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7364..7723
DNA (360bp) protein (120aa)
rplT; 50S ribosomal protein L20; K02887 large subunit ribosomal protein L20 id=12552967 bin=BDI species=unknown genus=unknown taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
50S ribosomal protein L20; K02887 large subunit ribosomal protein L20
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


7825..8877
DNA (1053bp) protein (351aa)
pheS; phenylalanyl-tRNA ligase subunit alpha (EC:6.1.1.20) id=12552968 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
pheS; phenylalanyl-tRNA ligase subunit alpha (EC:6.1.1.20)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


9014..11455
DNA (2442bp) protein (814aa)
pheT; phenylalanyl-tRNA ligase subunit beta (EC:6.1.1.20)
Phenylalanine--tRNA ligase beta subunit n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0N1_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11455..11799
DNA (345bp) protein (115aa)
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha id=12552971 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ihfA; integration host factor subunit alpha
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_11
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11942..12367
DNA (426bp) protein (142aa)
MerR family transcriptional regulator n=1 Tax=Acidovorax sp. KKS102 RepID=K0I2G2_9BURK
MerR family transcriptional regulator
MerR family transcriptional regulator {ECO:0000313|EMBL:AFU46535.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_628_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12575..15262
DNA (2688bp) protein (896aa)
acyl-CoA synthetase (EC:6.2.1.3); K09181 hypothetical protein id=12552973 bin=BDI species=Methylibium petroleiphilum genus=Methylibium taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
N-acetyltransferase GCN5; K09181 hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_13
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15317..15799)
DNA (483bp) protein (161aa)
hypothetical protein id=12552974 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_14
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15921..16394)
DNA (474bp) protein (158aa)
Uncharacterized protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TV61_ALIDB
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16391..16843)
DNA (453bp) protein (151aa)
Putative transmembrane anti-sigma factor n=1 Tax=Acidovorax sp. NO-1 RepID=H0BW10_9BURK
putative transmembrane anti-sigma factor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16858..17415)
DNA (558bp) protein (186aa)
RNA polymerase sigma factor, sigma-70 family; K03088 RNA polymerase sigma-70 factor, ECF subfamily id=12552975 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ECF subfamily RNA polymerase sigma-24 factor; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17547..17876)
DNA (330bp) protein (110aa)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18012..21719)
DNA (3708bp) protein (1236aa)
Delta-1-pyrroline-5-carboxylate dehydrogenase n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0P8_9BURK
delta-1-pyrroline-5-carboxylate dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21834..22307
DNA (474bp) protein (158aa)
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein id=12552978 bin=BDI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
AsnC family transcriptional regulator; K03719 Lrp/AsnC family transcriptional regulator, leucine-responsive regulatory protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22358..22654
DNA (297bp) protein (99aa)
hypothetical protein id=12552979 bin=BDI species=Acidovorax ebreus genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22681..24144
DNA (1464bp) protein (488aa)
rumA; 23S rRNA m(5)U1939 methyltransferase id=12552980 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
rumA; 23S rRNA m(5)U1939 methyltransferase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24157..24459)
DNA (303bp) protein (101aa)
hypothetical protein id=12552981 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_23
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24623..25315)
DNA (693bp) protein (231aa)
Uncharacterized protein n=2 Tax=Acidovorax RepID=A1W8J7_ACISJ
hypothetical protein; K06890
Uncharacterized protein {ECO:0000313|EMBL:ABM42572.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_628_curated_24
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25514..25921
DNA (408bp) protein (136aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TRP3_ALIDB
Uncharacterized protein {ECO:0000313|EMBL:KJA09528.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
hypothetical protein
scnpilot_p_inoc_scaffold_628_curated_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25964..27478)
DNA (1515bp) protein (505aa)
carbohydrate kinase id=12551519 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
carbohydrate kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27517..28767)
DNA (1251bp) protein (417aa)
D-amino-acid dehydrogenase id=12551520 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
D-amino-acid dehydrogenase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_27
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28817..30175)
DNA (1359bp) protein (453aa)
amidase; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] id=12551521 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
amidase (EC:3.5.1.4)
Amidase {ECO:0000313|EMBL:AFU45521.1}; EC=3.5.1.4 {ECO:0000313|EMBL:AFU45521.1};; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_628_curated_28
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists


30325..31077
DNA (753bp) protein (251aa)
rpsB; 30S ribosomal protein S2; K02967 small subunit ribosomal protein S2 id=12551522 bin=BDI species=Acidovorax citrulli genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
similar to ribosomal protein S2
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_628_curated_29
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31185..32084
DNA (900bp) protein (300aa)
Elongation factor Ts n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=EFTS_ACIAC rbh
tsf; elongation factor Ts; K02357 elongation factor Ts
Elongation factor Ts {ECO:0000255|HAMAP-Rule:MF_00050}; Short=EF-Ts {ECO:0000255|HAMAP-Rule:MF_00050};; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
scnpilot_p_inoc_scaffold_628_curated_30
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32148..32867
DNA (720bp) protein (240aa)
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22] id=12551524 bin=BDI species=Alicycliphilus denitrificans genus=Alicycliphilus taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
uridylate kinase; K09903 uridylate kinase [EC:2.7.4.22]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 1-30 of 52 in total

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