ggKbase home page

scnpilot_p_inoc_scaffold_958_curated

Search features with annotation key words

Displaying 23 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_958_curated_1
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..4090
DNA (4089bp) protein (1363aa)
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6) id=12551355 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6); K03046 DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_958_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4222..5619
DNA (1398bp) protein (466aa)
16S rRNA methyltransferase B n=1 Tax=Acidovorax sp. KKS102 RepID=K0HMI0_9BURK
16S rRNA methyltransferase B
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_958_curated_3
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5561..6244
DNA (684bp) protein (228aa)
hypothetical protein id=12551351 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_958_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6241..8532
DNA (2292bp) protein (764aa)
Multi-sensor signal transduction histidine kinase n=1 Tax=Acidovorax sp. NO-1 RepID=H0C462_9BURK
multi-sensor signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_958_curated_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8568..9236
DNA (669bp) protein (223aa)
Two component transcriptional regulator, Fis family n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8C1_ACIDE
two component Fis family transcriptional regulator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_958_curated_6
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9535..10890
DNA (1356bp) protein (452aa)
integrase n=1 Tax=Acidovorax radicis RepID=UPI000237801B
Phage-related integrase {ECO:0000313|EMBL:GAO21546.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
phage integrase family protein
scnpilot_p_inoc_scaffold_958_curated_7

Not on your lists

11434..12465
DNA (1032bp) protein (344aa)
DGQHR domain protein (Fragment) n=1 Tax=mine drainage metagenome RepID=T1AB18_9ZZZZ
DGQHR domain protein {ECO:0000313|EMBL:EQD54227.1}; Flags: Fragment;; TaxID=410659 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="mine drainage metagenome.;"
DGQHR domain protein
scnpilot_p_inoc_scaffold_958_curated_8
Mesorhizobium sp. LSJC285A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12458..14041
DNA (1584bp) protein (528aa)
UPI0003CEDDC9 related cluster n=1 Tax=unknown RepID=UPI0003CEDDC9
Radical SAM protein {ECO:0000313|EMBL:ESW82158.1}; TaxID=1287338 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC285A00.;"
radical SAM domain-containing protein
scnpilot_p_inoc_scaffold_958_curated_9
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14041..15597
DNA (1557bp) protein (519aa)
HSP90 family molecular chaperone-like protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6BAE2_RHILS
HSP90 family molecular chaperone-like protein; K04079 molecular chaperone HtpG
HSP90 family molecular chaperone-like protein {ECO:0000313|EMBL:ACS61050.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
scnpilot_p_inoc_scaffold_958_curated_10
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15702..16742
DNA (1041bp) protein (347aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YB11_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX27852.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
scnpilot_p_inoc_scaffold_958_curated_11
uncultured Desulfobacterium sp., Desulfobacterium, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16732..17799
DNA (1068bp) protein (356aa)
Putative uncharacterized protein n=1 Tax=uncultured Desulfobacterium sp. RepID=E1YB11_9DELT
Putative uncharacterized protein {ECO:0000313|EMBL:CBX27852.1}; TaxID=201089 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfobacterium; environmental samples.;" source="uncultured Desulfobacterium sp.;"
scnpilot_p_inoc_scaffold_958_curated_12
unknown

Not on your lists

17809..18864
DNA (1056bp) protein (352aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_958_curated_13
unknown

Not on your lists

18989..19273
DNA (285bp) protein (95aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_958_curated_14
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19276..20697
DNA (1422bp) protein (474aa)
Helicase domain protein n=1 Tax=Rhizobium leguminosarum bv. trifolii (strain WSM1325) RepID=C6BAE6_RHILS
helicase domain protein
Helicase domain protein {ECO:0000313|EMBL:ACS61054.1}; TaxID=395491 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. trifolii (strain WSM1325).;"
scnpilot_p_inoc_scaffold_958_curated_15
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20733..21887)
DNA (1155bp) protein (385aa)
DGQHR domain-containing protein n=1 Tax=Escherichia coli KTE44 RepID=L2Z8W3_ECOLX
DGQHR domain protein {ECO:0000313|EMBL:KEJ54392.1}; TaxID=1444220 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 3-020-07_S4_C1.;"
DGQHR domain-containing protein
scnpilot_p_inoc_scaffold_958_curated_16
unknown

Not on your lists

comp(21900..22562)
DNA (663bp) protein (221aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_958_curated_17
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22828..25509)
DNA (2682bp) protein (894aa)
Uncharacterized protein n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V3X9_VARPE
Uncharacterized protein {ECO:0000313|EMBL:ADU38098.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
hypothetical protein
scnpilot_p_inoc_scaffold_958_curated_18
Polaromonas naphthalenivorans, Polaromonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25809..26588)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Polaromonas naphthalenivorans (strain CJ2) RepID=A1VWE5_POLNA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM39973.1}; TaxID=365044 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Polaromonas.;" source="Polaromonas naphthalenivorans (strain CJ2).;"
scnpilot_p_inoc_scaffold_958_curated_19
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27284..28111
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Delftia acidovorans CCUG 274B RepID=S2WDK4_DELAC
F plasmid protein 32-like protein {ECO:0000313|EMBL:GAO21527.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_958_curated_20
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28196..30190
DNA (1995bp) protein (665aa)
ParB domain protein nuclease n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CWG2_VARPS
Nuclease {ECO:0000313|EMBL:GAO21526.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
ParB domain-containing protein nuclease; K03497 chromosome partitioning protein, ParB family
scnpilot_p_inoc_scaffold_958_curated_21
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31535..31879
DNA (345bp) protein (115aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CWG4_VARPS
Y4eB-like protein {ECO:0000313|EMBL:GAO21524.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_958_curated_22
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32436..32783
DNA (348bp) protein (116aa)
Putative uncharacterized protein n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CWG5_VARPS
Transposon protein {ECO:0000313|EMBL:GAO21523.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
hypothetical protein
scnpilot_p_inoc_scaffold_958_curated_23
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(32796..33113)
DNA (318bp) protein (106aa)
Transcriptional regulator, XRE family n=1 Tax=Variovorax paradoxus (strain S110) RepID=C5CWG6_VARPS
Transcriptional regulator {ECO:0000313|EMBL:GAO21522.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
XRE family transcriptional regulator
Displaying 23 items

View Taxonomy