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scnpilot_p_inoc_scaffold_856_curated

Search features with annotation key words

Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_856_curated_1
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1307)
DNA (1305bp) protein (435aa)
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase id=12552727 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase
PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:EHL24986.1}; Flags: Fragment;; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
scnpilot_p_inoc_scaffold_856_curated_2
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1536..2285
DNA (750bp) protein (250aa)
Crp/Fnr family transcriptional regulator id=12552728 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Crp/Fnr family transcriptional regulator {ECO:0000313|EMBL:EHL21567.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
Crp/Fnr family transcriptional regulator
scnpilot_p_inoc_scaffold_856_curated_3
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2404..5019
DNA (2616bp) protein (872aa)
DNA mismatch repair protein MutS n=1 Tax=Acidovorax sp. KKS102 RepID=K0I7M6_9BURK
DNA mismatch repair protein mutS-like
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_4
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5094..5552
DNA (459bp) protein (153aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BRW8_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_5
Sulfuritalea hydrogenivorans, Sulfuritalea, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5556..5870
DNA (315bp) protein (105aa)
hypothetical protein id=12552732 bin=BDI species=Methylobacter sp. UW 659-2-H10 genus=Methylobacter taxon_order=Methylococcales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:BAO28995.1}; TaxID=1223802 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Sulfuritalea.;" source="Sulfuritalea hydrogenivorans sk43H.;"
scnpilot_p_inoc_scaffold_856_curated_6
Acidovorax sp. NO-1, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5943..6608
DNA (666bp) protein (222aa)
N6 adenine-specific DNA methyltransferase protein, N12 class n=1 Tax=Acidovorax sp. NO-1 RepID=H0BRW6_9BURK
N6 adenine-specific DNA methyltransferase protein, N12 class {ECO:0000313|EMBL:EHL24982.1}; TaxID=512030 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. NO-1.;"
N6 adenine-specific DNA methyltransferase protein, N12 class
scnpilot_p_inoc_scaffold_856_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6634..6900
DNA (267bp) protein (89aa)
Putative uncharacterized protein n=1 Tax=Acidovorax sp. NO-1 RepID=H0BRW5_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6985..7803
DNA (819bp) protein (273aa)
alpha/beta hydrolase fold protein id=12552735 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
alpha/beta hydrolase fold protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_9
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7953..9755
DNA (1803bp) protein (601aa)
diguanylate cyclase id=12552736 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
diguanylate cyclase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9721..10560)
DNA (840bp) protein (280aa)
hypothetical protein id=12552737 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_11
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10595..11419)
DNA (825bp) protein (275aa)
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27) id=12552738 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
undecaprenyl pyrophosphate phosphatase (EC:3.6.1.27)
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_12
unknown

Not on your lists

11657..11755
DNA (99bp) protein (33aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_856_curated_13
unknown

Not on your lists

11840..11986
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_856_curated_14
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12202..12753
DNA (552bp) protein (184aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TXM0_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEB83785.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_856_curated_15
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12781..13071
DNA (291bp) protein (97aa)
2TM domain-containing protein id=12552744 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
2TM domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13071..14138
DNA (1068bp) protein (356aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035C152E
signal transduction histidine kinase, LytS
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_17
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14135..14959
DNA (825bp) protein (275aa)
response regulator receiver protein id=12552745 bin=BDI species=Acidovorax sp. CF316 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
response regulator receiver protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_18
Thauera linaloolentis, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15208..17145
DNA (1938bp) protein (646aa)
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Thauera linaloolentis 47Lol = DSM 12138 RepID=N6XYC5_9RHOO
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:ENO86816.1}; TaxID=1123367 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera linaloolentis 47Lol = DSM 12138.;"
hypothetical protein
scnpilot_p_inoc_scaffold_856_curated_19
Shewanella sp. HN-41, Shewanella, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17236..18225)
DNA (990bp) protein (330aa)
diguanylate cyclase n=1 Tax=Marinobacterium stanieri RepID=UPI0002559318
Diguanylate cyclase with GAF sensor {ECO:0000313|EMBL:EGM68438.1}; TaxID=327275 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Shewanellaceae; Shewanella.;" source="Shewanella sp. HN-41.;"
GGDEF domain protein
scnpilot_p_inoc_scaffold_856_curated_20
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18342..19820)
DNA (1479bp) protein (493aa)
Efflux transporter, outer membrane factor lipoprotein, NodT family n=1 Tax=Acidovorax sp. CF316 RepID=J0KHC8_9BURK
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:EJE53035.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
rnd efflux system, outer membrane lipoprotein, nodt family
scnpilot_p_inoc_scaffold_856_curated_21
Acidovorax temperans, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19820..22936)
DNA (3117bp) protein (1039aa)
Acriflavin resistance protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I7Q6_9BURK
Multidrug transporter {ECO:0000313|EMBL:KJA10518.1}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;"
acriflavin resistance protein
scnpilot_p_inoc_scaffold_856_curated_22
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23111..26212)
DNA (3102bp) protein (1034aa)
Acriflavin resistance protein n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TXL6_ALIDB
acriflavin resistance protein; K07788 RND superfamily, multidrug transport protein MdtB
Acriflavin resistance protein {ECO:0000313|EMBL:ADV00784.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_856_curated_23
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26228..27631)
DNA (1404bp) protein (468aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4GDX1_ALIDK
RND family efflux transporter MFP subunit; K07799 putative multidrug efflux transporter MdtA
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:AEB83788.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
scnpilot_p_inoc_scaffold_856_curated_24
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(27775..28416)
DNA (642bp) protein (214aa)
ABC transporter-like protein id=12552749 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28429..28857
DNA (429bp) protein (143aa)
hypothetical protein id=12552750 bin=BDI species=Acidovorax citrulli genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_26
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28996..29871
DNA (876bp) protein (292aa)
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein id=12552751 bin=BDI species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
inner-membrane translocator; K01997 branched-chain amino acid transport system permease protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_27
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29888..30964
DNA (1077bp) protein (359aa)
inner-membrane translocator; K01998 branched-chain amino acid transport system permease protein id=12552752 bin=BDI species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
inner-membrane translocator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_28
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30961..31758
DNA (798bp) protein (266aa)
ABC transporter-like protein; K01995 branched-chain amino acid transport system ATP-binding protein id=12552753 bin=BDI species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_29
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31755..32555
DNA (801bp) protein (267aa)
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein id=12552754 bin=BDI species=Polaromonas sp. CF318 genus=Polaromonas taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
ABC transporter-like protein; K01996 branched-chain amino acid transport system ATP-binding protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_856_curated_30
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32560..34413
DNA (1854bp) protein (618aa)
AMP-dependent synthetase and ligase; K01897 long-chain acyl-CoA synthetase [EC:6.2.1.3]
AMP-forming long-chain acyl-CoA synthetase n=1 Tax=Polaromonas sp. CF318 RepID=J2L502_9BURK
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
Displaying items 1-30 of 59 in total

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