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scnpilot_p_inoc_scaffold_600_curated

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Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_600_curated_1
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

99..860
DNA (762bp) protein (254aa)
Putative uncharacterized protein n=1 Tax=Ectothiorhodospira sp. PHS-1 RepID=H1G050_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:KGG93078.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
hypothetical protein
scnpilot_p_inoc_scaffold_600_curated_2
Pseudomonas poae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1226..1537
DNA (312bp) protein (104aa)
cupin n=1 Tax=Burkholderia kururiensis RepID=UPI000346B0D7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGE26457.1}; TaxID=1282356 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas poae RE*1-1-14.;"
scnpilot_p_inoc_scaffold_600_curated_3
RIFOXYC12_FULL_Burkholderiales_65_23_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1786..2364
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=gamma proteobacterium HdN1 RepID=E1VHJ5_9GAMM
hypothetical protein
Tax=RIFOXYC12_FULL_Burkholderiales_65_23_curated
scnpilot_p_inoc_scaffold_600_curated_4
Thauera sp. 27, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2408..2746
DNA (339bp) protein (113aa)
hypothetical protein id=12495453 bin=THIO_HI species=Ideonella sp. B508-1 genus=Ideonella taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:ENO82003.1}; TaxID=305700 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera sp. 27.;"
hypothetical protein
scnpilot_p_inoc_scaffold_600_curated_5
Thauera terpenica, Thauera, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2758..3741
DNA (984bp) protein (328aa)
cation diffusion facilitator family transporter id=12495454 bin=THIO_HI species=Thauera phenylacetica genus=Thauera taxon_order=Rhodocyclales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
Uncharacterized protein {ECO:0000313|EMBL:EPZ14167.1}; TaxID=1348657 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae; Thauera.;" source="Thauera terpenica 58Eu.;"
cation diffusion facilitator family transporter
scnpilot_p_inoc_scaffold_600_curated_6
Hydrogenophaga sp. T4, Hydrogenophaga, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3738..4055
DNA (318bp) protein (106aa)
hypothetical protein; K09771 hypothetical protein id=12495455 bin=THIO_HI species=unknown genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria
UPF0060 membrane protein Y695_00958 {ECO:0000256|HAMAP-Rule:MF_00010}; TaxID=1437444 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Hydrogenophaga.;" source="Hydrogenophaga sp. T4.;"
hypothetical protein; K09771 hypothetical protein
scnpilot_p_inoc_scaffold_600_curated_7
Nitrosomonas europaea, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4077..5276
DNA (1200bp) protein (400aa)
General substrate transporters n=1 Tax=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) RepID=Q82S66_NITEU
general substrate transporters rbh
General substrate transporters {ECO:0000313|EMBL:CAD86404.1}; TaxID=228410 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298).;"
scnpilot_p_inoc_scaffold_600_curated_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5292..5534)
DNA (243bp) protein (81aa)
hypothetical protein id=12552929 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_9
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5635..5940
DNA (306bp) protein (102aa)
Cytochrome c class I n=2 Tax=Alicycliphilus denitrificans RepID=E8U0L2_ALIDB
cytochrome c class I
Cytochrome c class I {ECO:0000313|EMBL:ADV01063.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_600_curated_10
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6101..8095)
DNA (1995bp) protein (665aa)
Acetyl-coenzyme A synthetase {ECO:0000256|HAMAP-Rule:MF_01123}; Short=AcCoA synthetase {ECO:0000256|HAMAP-Rule:MF_01123};; Short=Acs {ECO:0000256|HAMAP-Rule:MF_01123};; EC=6.2.1.1 {ECO:0000256|HAMAP-Rule:MF_01123};; Acetate--CoA ligase {ECO:0000256|HAMAP-Rule:MF_01123}; Acyl-activating enzyme {ECO:0000256|HAMAP-Rule:MF_01123}; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain
acetate/CoA ligase; K01895 acetyl-CoA synthetase [EC:6.2.1.1]
Acetyl-coenzyme A synthetase n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MF98_ACIET
scnpilot_p_inoc_scaffold_600_curated_11
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8219..9178)
DNA (960bp) protein (320aa)
2-nitropropane dioxygenase; K00459 nitronate monooxygenase [EC:1.13.12.16]
2-nitropropane dioxygenase, NPD n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W9M3_ACISJ
2-nitropropane dioxygenase, NPD {ECO:0000313|EMBL:ABM42948.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_600_curated_12
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9289..11079)
DNA (1791bp) protein (597aa)
acyl-CoA dehydrogenase-like protein id=12552471 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
acyl-CoA dehydrogenase-like protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_13
RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11103..11546)
DNA (444bp) protein (148aa)
Tax=RIFOXYD12_FULL_Gammaproteobacteria_61_37_curated
scnpilot_p_inoc_scaffold_600_curated_14
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11631..12563)
DNA (933bp) protein (311aa)
electron transfer flavoprotein subunit beta n=1 Tax=Comamonas testosteroni RepID=UPI00030DC219
Electron transfer flavoprotein subunit beta {ECO:0000313|EMBL:KGG83089.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
electron transfer flavoprotein subunit alpha; K03522 electron transfer flavoprotein alpha subunit
scnpilot_p_inoc_scaffold_600_curated_15
Acidovorax sp. JS42, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12584..13333)
DNA (750bp) protein (250aa)
Electron transfer flavoprotein beta-subunit n=2 Tax=Acidovorax RepID=A1W9M6_ACISJ
electron transfer flavoprotein alpha/beta-subunit; K03521 electron transfer flavoprotein beta subunit
Electron transfer flavoprotein beta-subunit {ECO:0000313|EMBL:ABM42951.1}; TaxID=232721 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. (strain JS42).;"
scnpilot_p_inoc_scaffold_600_curated_16
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13504..14805)
DNA (1302bp) protein (434aa)
mechanosensitive ion channel protein MscS id=12549742 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
mechanosensitive ion channel protein MscS
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_17
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14805..15605)
DNA (801bp) protein (267aa)
Enoyl-CoA hydratase/isomerase n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T6G7_ACIDE
Enoyl-CoA hydratase/isomerase {ECO:0000313|EMBL:EER59939.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
enoyl-CoA hydratase
scnpilot_p_inoc_scaffold_600_curated_18
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15624..16577)
DNA (954bp) protein (318aa)
histone deacetylase superfamily protein id=12549740 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
histone deacetylase superfamily protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_19
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16620..17540
DNA (921bp) protein (307aa)
ATPase; K03924 MoxR-like ATPase [EC:3.6.3.-]
ATPase id=12549739 bin=BDI species=Acidovorax sp. KKS102 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_20
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17547..18536
DNA (990bp) protein (330aa)
hypothetical protein n=1 Tax=Acidovorax radicis RepID=UPI00023754C4
hypothetical protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_21
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18619..20664
DNA (2046bp) protein (682aa)
transglutaminase domain-containing protein id=12549736 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
transglutaminase domain-containing protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_22
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

20661..21734
DNA (1074bp) protein (358aa)
lytic murein transglycosylase b; K08305 membrane-bound lytic murein transglycosylase B [EC:3.2.1.-]
lytic murein transglycosylase b id=12549735 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_23
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21756..22694)
DNA (939bp) protein (313aa)
Putative hydrolase or acyltransferase of alpha/beta superfamily n=1 Tax=Acidovorax sp. CF316 RepID=J0KIQ8_9BURK
Putative hydrolase or acyltransferase of alpha/beta superfamily {ECO:0000313|EMBL:EJE53495.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
lipase
scnpilot_p_inoc_scaffold_600_curated_24
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22779..23519
DNA (741bp) protein (247aa)
AraC family transcriptional regulator n=1 Tax=Hydrogenophaga sp. PBC RepID=I4MR05_9BURK
helix-turn-helix domain-containing protein
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
scnpilot_p_inoc_scaffold_600_curated_25
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23574..24911)
DNA (1338bp) protein (446aa)
transporter signal peptide protein id=12549728 bin=BDI species=Acidovorax delafieldii genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
transporter signal peptide protein
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_600_curated_26
Acidovorax delafieldii, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25002..25385
DNA (384bp) protein (128aa)
Heat shock protein Hsp20 n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T9W4_ACIDE
Heat shock protein Hsp20 {ECO:0000313|EMBL:EER58734.1}; TaxID=573060 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax delafieldii 2AN.;"
heat shock protein Hsp20
scnpilot_p_inoc_scaffold_600_curated_27
R_Betaproteobacteria_64_12, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25781..26476)
DNA (696bp) protein (232aa)
Transcriptional regulator, TetR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4RC63_PELHB
transcriptional regulator, TetR family
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_64_12_curated
scnpilot_p_inoc_scaffold_600_curated_28
Novosphingobium sp. P6W, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26532..28118
DNA (1587bp) protein (529aa)
hypothetical protein n=1 Tax=Actinomycetospora chiangmaiensis RepID=UPI000382BF36
Scaffold9, whole genome shotgun sequence {ECO:0000313|EMBL:KIS31551.1}; TaxID=1609758 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. P6W.;"
o-succinylbenzoate--CoA ligase
scnpilot_p_inoc_scaffold_600_curated_29
Saccharomonospora azurea, Saccharomonospora, Pseudonocardiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

28115..28897
DNA (783bp) protein (261aa)
Enoyl-CoA dehydratase n=1 Tax=Saccharomonospora azurea SZMC 14600 RepID=H0K4N4_9PSEU
Enoyl-CoA dehydratase {ECO:0000313|EMBL:EHK87462.1}; TaxID=1114959 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Saccharomonospora.;" source="Saccharomonospora azurea SZMC 14600.;"
enoyl-CoA hydratase/isomerase
scnpilot_p_inoc_scaffold_600_curated_30

Not on your lists

comp(28946..29482)
DNA (537bp) protein (179aa)
ISMca2 transposase OrfB n=1 Tax=uncultured bacterium RepID=C6KUL1_9BACT
ISMca2 transposase OrfB {ECO:0000313|EMBL:BAH89659.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Integrase catalytic region
Displaying items 1-30 of 57 in total

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