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scnpilot_p_inoc_scaffold_1774_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1774_curated_1
unknown

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comp(1336..2199)
DNA (864bp) protein (288aa)
hypothetical protein n=1 Tax=Chryseobacterium taeanense RepID=UPI0003709195
scnpilot_p_inoc_scaffold_1774_curated_2
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2496..2888)
DNA (393bp) protein (131aa)
TonB-dependent receptor id=12552697 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
TonB-dependent receptor
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1774_curated_3
Alicycliphilus denitrificans, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(3171..4397)
DNA (1227bp) protein (409aa)
Chromate transporter, chromate ion transporter (CHR) family n=2 Tax=Alicycliphilus denitrificans RepID=E8TU60_ALIDB
chromate transporter, chromate ion transporter (chr) family; K07240 chromate transporter
Chromate transporter, chromate ion transporter (CHR) family {ECO:0000313|EMBL:ADU99345.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
scnpilot_p_inoc_scaffold_1774_curated_4
Acidovorax sp. KKS102, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4526..4810
DNA (285bp) protein (95aa)
Secreted protein n=1 Tax=Acidovorax sp. KKS102 RepID=K0I102_9BURK
hypothetical protein
Secreted protein {ECO:0000313|EMBL:AFU45940.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
scnpilot_p_inoc_scaffold_1774_curated_5
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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4939..5535
DNA (597bp) protein (199aa)
chromate transporter id=12552035 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
chromate transporter; K07240 chromate transporter
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1774_curated_6
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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5532..6125
DNA (594bp) protein (198aa)
chromate transporter id=12552034 bin=BDI species=Acidovorax sp. MR-S7 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
chromate transporter; K07240 chromate transporter
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1774_curated_7
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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6238..7146
DNA (909bp) protein (303aa)
Two-component response regulator with diguanylate cyclase domain id=12552033 bin=BDI species=Desulfovibrio sp. X2 genus=Desulfovibrio taxon_order=Desulfovibrionales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
two-component response regulator, modulated diguanylate cyclase; K02488 two-component system, cell cycle response regulator
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1774_curated_8
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7133..11491)
DNA (4359bp) protein (1453aa)
Multi-sensor hybrid histidine kinase (Fragment) n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Y442_9PROT
signal transduction histidine kinase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1774_curated_9
BJP_08E140C01_Burkholderiales_65_30, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11660..12907)
DNA (1248bp) protein (416aa)
hypothetical protein id=5083704 bin=GWF1_Burkholderiales_GWF1_66_17 species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=GWF1_Burkholderiales_GWF1_66_17 organism_group=Betaproteobacteria organism_desc="Control" bin for RuBisCO paper Leave in GW2011 GOOD
hypothetical protein
Tax=BJP_08E140C01_Burkholderiales_65_30
scnpilot_p_inoc_scaffold_1774_curated_10
RLO_Burkholderiales_65_40, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13092..13841)
DNA (750bp) protein (250aa)
silent information regulator protein sir2; K12410 NAD-dependent deacetylase [EC:3.5.1.-]
silent information regulator protein sir2 id=12552026 bin=BDI species=Acidovorax sp. NO-1 genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
scnpilot_p_inoc_scaffold_1774_curated_11
R_Burkholderiales_67_14, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(13860..14603)
DNA (744bp) protein (248aa)
TrmH family RNA methyltransferase; K03218 23S rRNA (guanosine2251-2'-O)-methyltransferase [EC:2.1.1.185]
23S rRNA (guanosine-2'-O-)-methyltransferase RlmB n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W856_ACISJ
Tax=RifCSPlowO2_12_Burkholderiales_67_14_curated
scnpilot_p_inoc_scaffold_1774_curated_12
Acidovorax sp. CF316, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14683..15372)
DNA (690bp) protein (230aa)
phosphonate-transporting ATPase (EC:3.6.3.28); K02003 putative ABC transport system ATP-binding protein
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component n=1 Tax=Acidovorax sp. CF316 RepID=J0KEK5_9BURK
Putative ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component {ECO:0000313|EMBL:EJE49688.1}; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
scnpilot_p_inoc_scaffold_1774_curated_13
Bordetella avium, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16671..16799)
DNA (129bp) protein (43aa)
nrdA; ribonucleotide-diphosphate reductase subunit alpha (EC:1.17.4.1); K00525 ribonucleoside-diphosphate reductase alpha chain [EC:1.17.4.1]
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=360910 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella avium (strain 197N).;"
Ribonucleoside-diphosphate reductase n=1 Tax=Bordetella avium (strain 197N) RepID=Q2KUY0_BORA1
Displaying 13 items

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