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scnpilot_p_inoc_scaffold_814_curated_30

Organism: scnpilot_dereplicated_Burkholderiales_7

near complete RP 52 / 55 MC: 1 BSCG 51 / 51 MC: 1 ASCG 13 / 38
Location: comp(28814..29536)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-28 subunit FliA/WhiG id=12553402 bin=BDI species=Acidovorax radicis genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 88.0
  • Coverage: 242.0
  • Bit_score: 420
  • Evalue 1.60e-114
RNA polymerase sigma factor FliA {ECO:0000256|HAMAP-Rule:MF_00962}; RNA polymerase sigma factor for flagellar operon {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma F {ECO:0000256|HAMAP-Rule:MF_00962}; Sigma-28 {ECO:0000256|HAMAP-Rule:MF_00962}; TaxID=80878 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax temperans.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.7
  • Coverage: 238.0
  • Bit_score: 387
  • Evalue 1.60e-104
RNA polymerase sigma-28 subunit FliA/WhiG similarity KEGG
DB: KEGG
  • Identity: 80.3
  • Coverage: 238.0
  • Bit_score: 381
  • Evalue 1.50e-103

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Taxonomy

Acidovorax temperans → Acidovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 723
GTGACTTACACCGCCAAAGGCCAGCTCGATCGCAACGCCTTGCTCCAGCAGTACGCTCCGCTGGTGCGCCGCCTTGCGCACCACATGATCGCCAAGCTGCCGGCCAATGTGGAGCTCGATGACCTGATCCAGGTGGGGATGATCGGCCTGAACGACGCGCTGACGCGTTACGAGGCTTCCCAGGGCGCGCAGTTCGAGACCTTTGCCACGCAGCGCATCCGCGGCGCCATGCTCGACGAACTGCGTGACAACGACTGGATGAGCCGCGGCGCACGCAAAAGCCAGAAAGACATCGAGAAAGCCGTGCAGCGCTTGGAACAAAAGCTCGGGCGCAGCCCGATGGAATCGGAAATCGCCGTGGAGATGGACATGAGCCTGGCCGATTACCAGAGCCTGCTGACCAAGGTGCGCGGCACCCAGCTCGTGTACCTGGAGGACATGGCGCGCGGCGGCGAAGACGACGAGGGCTTCCTTGAACGGCACGAGTCCCCCGACAGCGAGGCCGACCCCATGGCCCTGCTGCGCAACCAGCGCCTGCGCTCCTCGCTGGTCCATGCCATCCAGTCACTGCCCGAGCGCGAGCAGTACATCATGGGCATGTACTACGAGCACGACATGAACCTCAAGGAAATCGCCGCGGTGCTGGGCGTGACGGAATCGCGCGTGTGCCAGTTGCACAGCCAGTCGATCGCCCGTTTGCGCGCCAAGATGCGCACGCACTGA
PROTEIN sequence
Length: 241
VTYTAKGQLDRNALLQQYAPLVRRLAHHMIAKLPANVELDDLIQVGMIGLNDALTRYEASQGAQFETFATQRIRGAMLDELRDNDWMSRGARKSQKDIEKAVQRLEQKLGRSPMESEIAVEMDMSLADYQSLLTKVRGTQLVYLEDMARGGEDDEGFLERHESPDSEADPMALLRNQRLRSSLVHAIQSLPEREQYIMGMYYEHDMNLKEIAAVLGVTESRVCQLHSQSIARLRAKMRTH*