ggKbase home page

scnpilot_p_inoc_scaffold_1111_curated

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_1111_curated_1
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(3..383)
DNA (381bp) protein (127aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003647A5D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96427.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1111_curated_2
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(376..1074)
DNA (699bp) protein (233aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VT62_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96426.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1111_curated_3
Leadbetterella byssophila, Leadbetterella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1064..1441)
DNA (378bp) protein (126aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037BF906
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ17063.1}; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
scnpilot_p_inoc_scaffold_1111_curated_4
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(1428..1751)
DNA (324bp) protein (108aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A9EDC
Uncharacterized protein {ECO:0000313|EMBL:EOR95363.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1111_curated_5
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(1748..2017)
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Pedobacter agri RepID=UPI00029A102C
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT93579.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_1111_curated_6
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(2124..2510)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GUF8_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR95361.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_1111_curated_7
unknown

Not on your lists

comp(2730..2882)
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1111_curated_8
unknown

Not on your lists

3083..3235
DNA (153bp) protein (51aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1111_curated_9
unknown

Not on your lists

3981..4181
DNA (201bp) protein (67aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1111_curated_10
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

4646..5545
DNA (900bp) protein (300aa)
Helix-turn-helix type 11 domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QT42_SPILD
hypothetical protein
Helix-turn-helix type 11 domain protein {ECO:0000313|EMBL:ADB41974.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_1111_curated_11
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

6095..8077
DNA (1983bp) protein (661aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI000362A273
CRISPR-associated protein
CRISPR-associated protein {ECO:0000313|EMBL:ADF51861.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
scnpilot_p_inoc_scaffold_1111_curated_12
Cecembia lonarensis, Cecembia, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

8092..9093
DNA (1002bp) protein (334aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI00036E8620
Csh2 family CRISPR-associated protein
Uncharacterized protein {ECO:0000313|EMBL:EKB47816.1}; TaxID=1225176 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cyclobacteriaceae; Cecembia.;" source="Cecembia lonarensis LW9.;"
scnpilot_p_inoc_scaffold_1111_curated_13
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9104..9877
DNA (774bp) protein (258aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI000377E6B2
CRISPR-associated protein Cas5
CRISPR-associated protein Cas5 {ECO:0000313|EMBL:ADF51863.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
scnpilot_p_inoc_scaffold_1111_curated_14
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

9874..12330
DNA (2457bp) protein (819aa)
hypothetical protein n=1 Tax=Spirosoma luteum RepID=UPI0003669AEE
CRISPR-associated helicase Cas3; K07012
CRISPR-associated helicase Cas3 {ECO:0000313|EMBL:ADF51864.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
scnpilot_p_inoc_scaffold_1111_curated_15
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

12338..13012
DNA (675bp) protein (225aa)
DNA repair protein n=1 Tax=Spirosoma spitsbergense RepID=UPI000374A58E
DNA repair protein {ECO:0000313|EMBL:AKD54479.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
DNA repair protein
scnpilot_p_inoc_scaffold_1111_curated_16
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

13025..14059
DNA (1035bp) protein (345aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
CRISPR-associated protein Cas1 n=1 Tax=Rudanella lutea RepID=UPI00035C3842
CRISPR-associated protein Cas1; K15342 CRISP-associated protein Cas1
scnpilot_p_inoc_scaffold_1111_curated_17
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14056..14346
DNA (291bp) protein (97aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
CRISPR-associated protein Cas2 n=1 Tax=Rudanella lutea RepID=UPI00035D0FD7
CRISPR-associated protein Cas2
scnpilot_p_inoc_scaffold_1111_curated_18
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

14349..14921
DNA (573bp) protein (191aa)
CRISPR-associated protein Cas4 n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QT52_SPILD
CRISPR-associated protein Cas4; K07464 putative RecB family exonuclease
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:ADB41984.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_1111_curated_19
unknown

Not on your lists

comp(17399..17548)
DNA (150bp) protein (50aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1111_curated_20
unknown

Not on your lists

comp(18210..18356)
DNA (147bp) protein (49aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_1111_curated_21
unknown

Not on your lists

comp(22658..22837)
DNA (180bp) protein (60aa)

This feature has no annotations

Displaying 21 items

View Taxonomy