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scnpilot_p_inoc_scaffold_18_curated

Search features with annotation key words

Displaying items 1-30 of 457 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_18_curated_1
Zunongwangia profunda, Zunongwangia, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3..479
DNA (477bp) protein (159aa)
Type IV secretory pathway VirD4 components-like protein n=1 Tax=Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) RepID=D5BJN9_ZUNPS
type IV secretory pathway VirD4 components-like protein
Type IV secretory pathway VirD4 components-like protein {ECO:0000313|EMBL:ADF53737.1}; TaxID=655815 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Zunongwangia.;" source="Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87).;"
scnpilot_p_inoc_scaffold_18_curated_2
GWF2_TM6_33_332, TM6, Bacteria

Not on your lists

comp(662..1879)
DNA (1218bp) protein (406aa)
hypothetical protein n=1 Tax=Herbaspirillum lusitanum RepID=UPI0002FAA4AC
Uncharacterized protein {ECO:0000313|EMBL:KKP52205.1}; TaxID=1619080 species="Bacteria; candidate division TM6.;" source="candidate division TM6 bacterium GW2011_GWF2_33_332.;"
scnpilot_p_inoc_scaffold_18_curated_3
GWF2_TM6_33_332, TM6, Bacteria

Not on your lists

comp(1876..3126)
DNA (1251bp) protein (417aa)
Uncharacterized protein n=1 Tax=Marinobacter lipolyticus SM19 RepID=R8B3R9_9ALTE
Uncharacterized protein {ECO:0000313|EMBL:KKP52204.1}; TaxID=1619080 species="Bacteria; candidate division TM6.;" source="candidate division TM6 bacterium GW2011_GWF2_33_332.;"
scnpilot_p_inoc_scaffold_18_curated_4
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(3213..5600)
DNA (2388bp) protein (796aa)
Putative uncharacterized protein n=1 Tax=Shewanella piezotolerans (strain WP3 / JCM 13877) RepID=B8CUF6_SHEPW
hypothetical protein
Tax=BJP_08E140C01_Bacteriodales_41_10
scnpilot_p_inoc_scaffold_18_curated_5
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(5587..6564)
DNA (978bp) protein (326aa)
Putative uncharacterized protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EQ11_CORAD
hypothetical protein
Tax=BJP_08E140C01_Bacteriodales_41_10
scnpilot_p_inoc_scaffold_18_curated_6
Thalassomonas viridans, Thalassomonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6571..9585)
DNA (3015bp) protein (1005aa)
Putative endonuclease, Z1 domain protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EQ12_CORAD
Uncharacterized protein {ECO:0000313|EMBL:KJE46698.1}; TaxID=137584 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Colwelliaceae; Thalassomonas.;" source="Thalassomonas viridans.;"
Putative endonuclease, Z1 domain-containing protein
scnpilot_p_inoc_scaffold_18_curated_7
BJP_08E140C01_Bacteriodales_41_10, Bacteriodales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(9578..11098)
DNA (1521bp) protein (507aa)
ATP-binding region ATPase domain protein n=1 Tax=Coraliomargarita akajimensis (strain DSM 45221 / IAM 15411 / JCM 23193 / KCTC 12865) RepID=D5EQ13_CORAD
ATP-binding protein
Tax=BJP_08E140C01_Bacteriodales_41_10
scnpilot_p_inoc_scaffold_18_curated_8
Arcobacter butzleri, Arcobacter, Campylobacterales, Epsilonproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11091..12716)
DNA (1626bp) protein (542aa)
DNA methyltransferase n=1 Tax=Pedobacter agri RepID=UPI00029B428A
C-5 cytosine-specific DNA methylase
C-5 cytosine-specific DNA methylase {ECO:0000313|EMBL:AGR77632.1}; TaxID=1036172 species="Bacteria; Proteobacteria; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Arcobacter.;" source="Arcobacter butzleri 7h1h.;"
scnpilot_p_inoc_scaffold_18_curated_9
Muricauda ruestringensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(13193..13402)
DNA (210bp) protein (70aa)
Helix-turn-helix domain protein n=1 Tax=Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) RepID=G2PK73_MURRD
helix-turn-helix domain-containing protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:AEM69847.1}; TaxID=886377 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1).;"
scnpilot_p_inoc_scaffold_18_curated_10
Flavobacterium hibernum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

13519..13752
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Aequorivita sublithincola (strain DSM 14238 / LMG 21431 / ACAM 643 / 9-3) RepID=I3YTD1_AEQSU
Strain DSM 12611 Contig03, whole genome shotgun sequence {ECO:0000313|EMBL:KIO54425.1}; TaxID=37752 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium hibernum.;"
scnpilot_p_inoc_scaffold_18_curated_11
unknown

Not on your lists

13957..14112
DNA (156bp) protein (52aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_18_curated_12
Muricauda ruestringensis, Muricauda, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(14062..15735)
DNA (1674bp) protein (558aa)
Uncharacterized protein n=1 Tax=Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1) RepID=G2PR95_MURRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEM69276.1}; TaxID=886377 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Muricauda.;" source="Muricauda ruestringensis (strain DSM 13258 / LMG 19739 / B1).;"
scnpilot_p_inoc_scaffold_18_curated_13
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(16300..16965)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GU08_9BACT
Uncharacterized protein {ECO:0000313|EMBL:CCH57609.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
scnpilot_p_inoc_scaffold_18_curated_14
Pontibacter korlensis, Pontibacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17857..19107
DNA (1251bp) protein (417aa)
Tyrosine recombinase XerD n=1 Tax=Cesiribacter andamanensis AMV16 RepID=M7N858_9BACT
Site-specific tyrosine recombinase XerD {ECO:0000313|EMBL:AKD05616.1}; TaxID=400092 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Pontibacter.;" source="Pontibacter korlensis.;"
integrase
scnpilot_p_inoc_scaffold_18_curated_15
unknown

Not on your lists

19110..20123
DNA (1014bp) protein (338aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_18_curated_16
Mucinivorans hirudinis, Mucinivorans, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

20253..20582
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Lacinutrix sp. (strain 5H-3-7-4) RepID=F6GJR7_LACS5
Mobilizable transposon {ECO:0000313|EMBL:CDN31919.1}; TaxID=1433126 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Rikenellaceae; Mucinivorans.;" source="Mucinivorans hirudinis.;"
scnpilot_p_inoc_scaffold_18_curated_17
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

20595..21824
DNA (1230bp) protein (410aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI0003808B11
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT96369.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_18_curated_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

22095..23021
DNA (927bp) protein (309aa)
DNA primase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VSD3_DYAFD
DNA primase
DNA primase {ECO:0000313|EMBL:ACT96368.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_18_curated_19
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23305..23856
DNA (552bp) protein (184aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YCT1_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ25102.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_p_inoc_scaffold_18_curated_20
Sphingobacterium sp. 21, Sphingobacterium, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

23884..24849
DNA (966bp) protein (322aa)
Uncharacterized protein n=1 Tax=Sphingobacterium sp. (strain 21) RepID=F4C338_SPHS2
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADZ76890.1}; TaxID=743722 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Sphingobacterium.;" source="Sphingobacterium sp. (strain 21).;"
scnpilot_p_inoc_scaffold_18_curated_21
unknown

Not on your lists

comp(25031..25315)
DNA (285bp) protein (95aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_18_curated_22
unknown

Not on your lists

comp(25596..25868)
DNA (273bp) protein (91aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037C97E3
scnpilot_p_inoc_scaffold_18_curated_23
Leeuwenhoekiella blandensis, Leeuwenhoekiella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

26117..26515
DNA (399bp) protein (133aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037550E6
Uncharacterized protein {ECO:0000313|EMBL:EAQ51303.1}; TaxID=398720 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Leeuwenhoekiella.;" source="Leeuwenhoekiella blandensis (strain CECT 7118 / CCUG 51940 / MED217); (Flavobacterium sp. (strain MED217)).;"
lambda repressor-like DNA-binding protein
scnpilot_p_inoc_scaffold_18_curated_24
unknown

Not on your lists

comp(27151..27258)
DNA (108bp) protein (36aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_18_curated_25
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(27265..30609)
DNA (3345bp) protein (1115aa)
ASPIC/UnbV domain protein n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QD25_SPILD
ASPIC/UnbV domain-containing protein
ASPIC/UnbV domain protein {ECO:0000313|EMBL:ADB41031.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_18_curated_26
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(30659..33991)
DNA (3333bp) protein (1111aa)
RNA-binding protein n=1 Tax=Spirosoma luteum RepID=UPI00037B25C3
ASPIC/UnbV domain protein {ECO:0000313|EMBL:CCH56948.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
ASPIC/UnbV domain protein
scnpilot_p_inoc_scaffold_18_curated_27
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(34103..35572)
DNA (1470bp) protein (490aa)
RagB/SusD domain protein n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GSR8_9BACT
RagB/SusD domain protein {ECO:0000313|EMBL:CCH56947.1}; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
RagB/SusD domain-containing protein
scnpilot_p_inoc_scaffold_18_curated_28
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(35634..38708)
DNA (3075bp) protein (1025aa)
TonB-dependent receptor plug n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QD28_SPILD
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ADB41034.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_18_curated_29
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

39987..41108
DNA (1122bp) protein (374aa)
Uncharacterized protein n=1 Tax=Joostella marina DSM 19592 RepID=I3C3Q6_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EIJ38249.1}; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
toxin-antitoxin system, toxin component, Fic family
scnpilot_p_inoc_scaffold_18_curated_30
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(41357..41638)
DNA (282bp) protein (94aa)
Putative uncharacterized protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VS46_DYAFD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT94567.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Displaying items 1-30 of 457 in total

View Taxonomy