ggKbase home page

scnpilot_p_inoc_scaffold_113_curated

Search features with annotation key words

Displaying items 1-30 of 204 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_113_curated_1
Fibrella aestuarina, Fibrella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(76..1821)
DNA (1746bp) protein (582aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000381B508
Macrolide export ATP-binding/permease protein macB
Macrolide export ATP-binding/permease protein macB {ECO:0000313|EMBL:CCG98220.1}; TaxID=1166018 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrella.;" source="Fibrella aestuarina BUZ 2.;"
scnpilot_p_inoc_scaffold_113_curated_2
Spirosoma radiotolerans, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(2055..2393)
DNA (339bp) protein (113aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000364D065
PadR family transcriptional regulator
PadR family transcriptional regulator {ECO:0000313|EMBL:AKD56599.1}; TaxID=1379870 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma radiotolerans.;"
scnpilot_p_inoc_scaffold_113_curated_3
Chryseobacterium sp. CF314, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

3166..3888
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Chryseobacterium sp. CF314 RepID=J2K8N5_9FLAO
Uncharacterized protein {ECO:0000313|EMBL:EJL69573.1}; TaxID=1144316 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium sp. CF314.;"
hypothetical protein
scnpilot_p_inoc_scaffold_113_curated_4
unknown

Not on your lists

3971..4102
DNA (132bp) protein (44aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_113_curated_5
Runella slithyformis, Runella, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(4096..7974)
DNA (3879bp) protein (1293aa)
Multi-sensor hybrid histidine kinase n=1 Tax=Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 / NCIMB 11436 / LSU 4) RepID=F8EIX8_RUNSL
multi-sensor hybrid histidine kinase
Multi-sensor hybrid histidine kinase {ECO:0000313|EMBL:AEI49652.1}; TaxID=761193 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Runella.;" source="Runella slithyformis (strain ATCC 29530 / DSM 19594 / LMG 11500 /; NCIMB 11436 / LSU 4).;"
scnpilot_p_inoc_scaffold_113_curated_6
Leptospira inadai, Leptospira, Spirochaetia, Spirochaetes, Bacteria

Not on your lists

comp(8250..9749)
DNA (1500bp) protein (500aa)
Uncharacterized protein n=1 Tax=Leptospira inadai serovar Lyme str. 10 RepID=V6HUY1_9LEPT
Uncharacterized protein {ECO:0000313|EMBL:EQA36609.1}; TaxID=1049790 species="Bacteria; Spirochaetes; Leptospirales; Leptospiraceae; Leptospira.;" source="Leptospira inadai serovar Lyme str. 10.;"
myosin-crossreactive antigen
scnpilot_p_inoc_scaffold_113_curated_7
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

10605..11669
DNA (1065bp) protein (355aa)
Transcriptional regulator, Crp/Fnr family n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VTE5_DYAFD
Crp/Fnr family transcriptional regulator
Transcriptional regulator, Crp/Fnr family {ECO:0000313|EMBL:ACT96509.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_113_curated_8
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

11760..12227
DNA (468bp) protein (156aa)
Glyoxalase/bleomycin resistance protein/dioxygenase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YCI5_9SPHI
Glyoxalase/bleomycin resistance protein/dioxygenase {ECO:0000313|EMBL:EHQ30663.1}; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
scnpilot_p_inoc_scaffold_113_curated_9
Fibrisoma limi, Fibrisoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(12340..14991)
DNA (2652bp) protein (884aa)
Ca2+-transporting ATPase {ECO:0000313|EMBL:CCH57041.1}; EC=3.6.3.8 {ECO:0000313|EMBL:CCH57041.1};; TaxID=1185876 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Fibrisoma.;" source="Fibrisoma limi BUZ 3.;"
ATPase, p-type (transporting), had superfamily, subfamily ic (EC:3.6.3.8); K01537 Ca2+-transporting ATPase [EC:3.6.3.8]
Ca2+-transporting ATPase n=1 Tax=Fibrisoma limi BUZ 3 RepID=I2GT12_9BACT
scnpilot_p_inoc_scaffold_113_curated_10
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(15200..15601)
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000367DE86
NADPH-quinone reductase {ECO:0000313|EMBL:KER11146.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
putative NAD(P)H dehydrogenase
scnpilot_p_inoc_scaffold_113_curated_11
Flavobacterium subsaxonicum, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(15689..16696)
DNA (1008bp) protein (336aa)
NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase; K03778 D-lactate dehydrogenase [EC:1.1.1.28]
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036AA090
2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:KGO95135.1}; TaxID=1121898 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium subsaxonicum WB 4.1-42 = DSM 21790.;"
scnpilot_p_inoc_scaffold_113_curated_12
unknown

Not on your lists

comp(16829..17089)
DNA (261bp) protein (87aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_113_curated_13
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

17350..18195
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003633986
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ACT91964.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_113_curated_14
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

18781..19311
DNA (531bp) protein (177aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000377D00D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEW00897.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_113_curated_15
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

19289..20800
DNA (1512bp) protein (504aa)
succinate CoA transferase; K01067 acetyl-CoA hydrolase [EC:3.1.2.1]
Succinate CoA transferase {ECO:0000313|EMBL:ACT93435.1}; EC=3.1.2.1 {ECO:0000313|EMBL:ACT93435.1};; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
Succinate CoA transferase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VYT0_DYAFD
scnpilot_p_inoc_scaffold_113_curated_16
Niastella koreensis, Niastella, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

20813..21652
DNA (840bp) protein (280aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI0003746AC4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEV99871.1}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;"
scnpilot_p_inoc_scaffold_113_curated_17
unknown

Not on your lists

comp(21718..21960)
DNA (243bp) protein (81aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_113_curated_18
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(21972..22787)
DNA (816bp) protein (272aa)
UspA domain protein n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6VSS2_DYAFD
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ACT92894.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_113_curated_19
unknown

Not on your lists

comp(22791..23027)
DNA (237bp) protein (79aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_113_curated_20
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(23057..23902)
DNA (846bp) protein (282aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000377B315
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ACT91964.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_113_curated_21
Chlorobium sp. GBChlB, Chlorobium, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(24061..24633)
DNA (573bp) protein (191aa)
hypothetical protein n=1 Tax=Proteiniphilum acetatigenes RepID=UPI000367DE86
NADPH-quinone reductase {ECO:0000313|EMBL:KER11146.1}; TaxID=1519464 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Chlorobium.;" source="Chlorobium sp. GBChlB.;"
putative NAD(P)H dehydrogenase
scnpilot_p_inoc_scaffold_113_curated_22
unknown

Not on your lists

24909..25103
DNA (195bp) protein (65aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_113_curated_23
Flavobacterium beibuense, Flavobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(25190..26200)
DNA (1011bp) protein (337aa)
Alcohol dehydrogenase n=1 Tax=Flavobacterium frigoris PS1 RepID=H7FUR9_9FLAO
Alcohol dehydrogenase {ECO:0000313|EMBL:KGO79738.1}; TaxID=1406840 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Flavobacterium.;" source="Flavobacterium beibuense F44-8.;"
Zn-dependent alcohol dehydrogenase
scnpilot_p_inoc_scaffold_113_curated_24
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

26447..27280
DNA (834bp) protein (278aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00037D2DE3
UspA domain-containing protein
UspA domain protein {ECO:0000313|EMBL:ACT96190.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_113_curated_25
Gordonia sp. NB4-1Y, Gordonia, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27273..27806
DNA (534bp) protein (178aa)
Putative uncharacterized protein (Fragment) n=1 Tax=Gordonia sputi NBRC 100414 RepID=H5U4F6_9ACTO
CAAX amino terminal protease family protein {ECO:0000313|EMBL:EMP14375.1}; TaxID=1241906 species="Bacteria; Actinobacteria; Corynebacteriales; Gordoniaceae; Gordonia.;" source="Gordonia sp. NB4-1Y.;"
Abortive infection protein
scnpilot_p_inoc_scaffold_113_curated_26
Paenibacillus stellifer, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

27818..28087
DNA (270bp) protein (90aa)
hypothetical protein n=1 Tax=Clostridium beijerinckii RepID=UPI0002E265F5
Abortive infection protein {ECO:0000313|EMBL:AIQ65434.1}; TaxID=169760 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus stellifer.;"
Abortive infection protein
scnpilot_p_inoc_scaffold_113_curated_27
Solitalea canadensis, Solitalea, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(28462..29211)
DNA (750bp) protein (250aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000365E8C5
dehydrogenase
Uncharacterized protein {ECO:0000313|EMBL:AFD07957.1}; TaxID=929556 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Solitalea.;" source="Solitalea canadensis (strain ATCC 29591 / DSM 3403 / NBRC 15130 /; NCIMB 12057 / USAM 9D) (Flexibacter canadensis).;"
scnpilot_p_inoc_scaffold_113_curated_28
Mucilaginibacter paludis, Mucilaginibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(29250..30125)
DNA (876bp) protein (292aa)
Putative uncharacterized protein n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1Y830_9SPHI
Putative uncharacterized protein {ECO:0000313|EMBL:EHQ31052.1}; Flags: Precursor;; TaxID=714943 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Mucilaginibacter.;" source="Mucilaginibacter paludis DSM 18603.;"
hypothetical protein
scnpilot_p_inoc_scaffold_113_curated_29
Vitellibacter vladivostokensis, Vitellibacter, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(30275..30613)
DNA (339bp) protein (113aa)
Conserved hypothetical membrane protein n=1 Tax=Zobellia galactanivorans (strain DSM 12802 / CIP 106680 / NCIMB 13871 / Dsij) RepID=G0L0L7_ZOBGA
Uncharacterized protein {ECO:0000313|EMBL:KJJ39080.1}; TaxID=171194 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Vitellibacter.;" source="Vitellibacter vladivostokensis.;"
hypothetical protein
scnpilot_p_inoc_scaffold_113_curated_30
unknown

Not on your lists

comp(31305..31439)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying items 1-30 of 204 in total

View Taxonomy