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scnpilot_p_inoc_scaffold_42_curated

Search features with annotation key words

Displaying items 271-295 of 295 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
scnpilot_p_inoc_scaffold_42_curated_271
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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320858..321568
DNA (711bp) protein (237aa)
Short-chain dehydrogenase/reductase SDR n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNJ9_CHIPD
short-chain dehydrogenase/reductase SDR
Short-chain dehydrogenase/reductase SDR {ECO:0000313|EMBL:ACU64099.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_42_curated_272
Chryseobacterium taiwanense, Chryseobacterium, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

Not on your lists

321661..322662
DNA (1002bp) protein (334aa)
Aldo/keto reductase n=1 Tax=Mucilaginibacter paludis DSM 18603 RepID=H1YCM7_9SPHI
Aldo/keto reductase {ECO:0000313|EMBL:KIC65159.1}; TaxID=363331 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Chryseobacterium.;" source="Chryseobacterium taiwanense.;"
pyridoxine 4-dehydrogenase
scnpilot_p_inoc_scaffold_42_curated_273
Chitinophaga pinensis, Chitinophaga, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

322712..323626
DNA (915bp) protein (305aa)
Transcriptional regulator, AraC family n=1 Tax=Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM 2034) RepID=C7PNK1_CHIPD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ACU64101.1}; TaxID=485918 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Chitinophaga.;" source="Chitinophaga pinensis (strain ATCC 43595 / DSM 2588 / NCIB 11800 / UQM; 2034).;"
scnpilot_p_inoc_scaffold_42_curated_274
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(323970..325109)
DNA (1140bp) protein (380aa)
Beta-lactamase n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QHL6_SPILD
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:ADB39815.1}; Flags: Precursor;; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_42_curated_275
Spirosoma linguale, Spirosoma, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(325209..326039)
DNA (831bp) protein (277aa)
Transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896) RepID=D2QHL7_SPILD
AraC family transcriptional regulator
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ADB39816.1}; TaxID=504472 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Spirosoma.;" source="Spirosoma linguale (strain ATCC 33905 / DSM 74 / LMG 10896).;"
scnpilot_p_inoc_scaffold_42_curated_276
Joostella marina, Joostella, Flavobacteriales, Flavobacteriia, Bacteroidetes, Bacteria

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326738..327025
DNA (288bp) protein (96aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI000363FAFB
Transposase {ECO:0000313|EMBL:EIJ38219.1}; Flags: Precursor;; TaxID=926559 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Joostella.;" source="Joostella marina DSM 19592.;"
transposase IS3/IS911 family protein
scnpilot_p_inoc_scaffold_42_curated_277
CG_Elusi_05, Elusimicrobia, Bacteria

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327022..327324
DNA (303bp) protein (101aa)
integrase n=1 Tax=Anaerophaga thermohalophila RepID=UPI000237CAB5
transposase
Tax=CG_Elusi_05
scnpilot_p_inoc_scaffold_42_curated_278

Not on your lists

327446..327862
DNA (417bp) protein (139aa)
Marine sediment metagenome DNA, contig: S12H4_S09701 {ECO:0000313|EMBL:GAI88739.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
integrase catalytic region id=2119532 bin=GWD2_Bacteroidales_45_23 species=Anaerophaga thermohalophila genus=Anaerophaga taxon_order=Bacteroidales taxon_class=Bacteroidia phylum=Bacteroidetes tax=GWD2_Bacteroidales_45_23 organism_group=Bacteroidetes
transposase
scnpilot_p_inoc_scaffold_42_curated_279
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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328527..329600
DNA (1074bp) protein (358aa)
Regulatory protein LacI n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XUR1_PEDHD
regulatory protein LacI; K02529 LacI family transcriptional regulator
Regulatory protein LacI {ECO:0000313|EMBL:ACU03911.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_42_curated_280
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

329695..331533
DNA (1839bp) protein (613aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y378_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU05303.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_42_curated_281
Bacteroides eggerthii, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

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331806..332735
DNA (930bp) protein (310aa)
Uncharacterized protein n=1 Tax=Bacteroides eggerthii CAG:109 RepID=R5K816_9BACE
Putative uncharacterized protein {ECO:0000313|EMBL:EEC54296.1}; TaxID=483216 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides eggerthii DSM 20697.;"
xylose isomerase domain-containing protein
scnpilot_p_inoc_scaffold_42_curated_282
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

332771..334300
DNA (1530bp) protein (510aa)
hypothetical protein n=1 Tax=Spirosoma panaciterrae RepID=UPI000376D616
glycoside hydrolase family protein
Glycoside hydrolase family 28 {ECO:0000313|EMBL:ACU05310.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_42_curated_283
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

334427..339676
DNA (5250bp) protein (1750aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y379_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU05304.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_42_curated_284
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

339663..340910
DNA (1248bp) protein (416aa)
Putative uncharacterized protein n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y383_PEDHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACU05308.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_42_curated_285
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

340940..343777
DNA (2838bp) protein (946aa)
TonB-dependent receptor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y382_PEDHD
TonB-dependent receptor
TonB-dependent receptor {ECO:0000313|EMBL:ACU05307.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_42_curated_286
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

343823..344620
DNA (798bp) protein (266aa)
glucosamine/galactosamine-6-phosphate isomerase; K02564 glucosamine-6-phosphate deaminase [EC:3.5.99.6]
Glucosamine/galactosamine-6-phosphate isomerase n=1 Tax=Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114) RepID=C6W2X4_DYAFD
Glucosamine/galactosamine-6-phosphate isomerase {ECO:0000313|EMBL:ACT95687.1}; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_287
Pedobacter heparinus, Pedobacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

344672..345964
DNA (1293bp) protein (431aa)
Major facilitator superfamily MFS_1 n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6Y387_PEDHD
major facilitator superfamily protein; K08191 MFS transporter, ACS family, hexuronate transporter
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ACU05312.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;"
scnpilot_p_inoc_scaffold_42_curated_288
Paenibacillus beijingensis, Paenibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

345996..347939
DNA (1944bp) protein (648aa)
tynA; tyramine oxidase; K00276 primary-amine oxidase [EC:1.4.3.21]
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002FE49CE
Amine oxidase {ECO:0000256|RuleBase:RU000672}; TaxID=1126833 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus.;" source="Paenibacillus beijingensis.;"
scnpilot_p_inoc_scaffold_42_curated_289
unknown

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347963..348373
DNA (411bp) protein (137aa)

This feature has no annotations

scnpilot_p_inoc_scaffold_42_curated_290
Bacteroides thetaiotaomicron, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

349429..350703
DNA (1275bp) protein (425aa)
hypothetical protein n=1 Tax=Segetibacter koreensis RepID=UPI00037DC315
reverse transcriptase rbh
Reverse transcriptase {ECO:0000313|EMBL:AAO77722.1}; TaxID=226186 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides.;" source="Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC; 10582 / E50 / VPI-5482).;"
scnpilot_p_inoc_scaffold_42_curated_291
Dyadobacter fermentans, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(350975..351694)
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Dyadobacter beijingensis RepID=UPI00036AFD26
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACT95330.1}; Flags: Precursor;; TaxID=471854 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Dyadobacter.;" source="Dyadobacter fermentans (strain ATCC 700827 / DSM 18053 / NS114).;"
scnpilot_p_inoc_scaffold_42_curated_292
GWF2_Bacteroidetes_43_11_curated, Bacteroidia, Bacteroidetes, Bacteria

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comp(351714..353105)
DNA (1392bp) protein (464aa)
Putative uncharacterized protein id=2006754 bin=GWE2_Bacteroidetes_42_24 species=Polaribacter irgensii genus=Polaribacter taxon_order=Flavobacteriales taxon_class=Flavobacteriia phylum=Bacteroidetes tax=GWE2_Bacteroidetes_42_24 organism_group=Bacteroidetes
dienelactone hydrolase-like enzyme
Tax=GWF2_Bacteroidetes_43_11_curated
scnpilot_p_inoc_scaffold_42_curated_293
Arcticibacter svalbardensis, Arcticibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

Not on your lists

comp(353102..353671)
DNA (570bp) protein (190aa)
Uncharacterized protein n=1 Tax=Arcticibacter svalbardensis MN12-7 RepID=R9GZC2_9SPHI
Uncharacterized protein {ECO:0000313|EMBL:EOR94324.1}; TaxID=1150600 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Arcticibacter.;" source="Arcticibacter svalbardensis MN12-7.;"
hypothetical protein
scnpilot_p_inoc_scaffold_42_curated_294
Bacteroides faecis CAG:32, Bacteroides, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(353664..353933)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Bacteroides faecis CAG:32 RepID=R6VFZ9_9BACE
Uncharacterized protein {ECO:0000313|EMBL:CDC91101.1}; TaxID=1263044 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; environmental samples.;" source="Bacteroides faecis CAG:32.;"
hypothetical protein
scnpilot_p_inoc_scaffold_42_curated_295
unknown

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354301..354438
DNA (138bp) protein (46aa)

This feature has no annotations

Displaying items 271-295 of 295 in total

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